Hg_chrom4_TN10mRNA_8368
Organism: Heterodera glycines Gene Locus: chr4:7453558-7461491 Feature type: polypeptideProtein Sequence
Length: 1,390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.937 | 0.368 | 0.654 | 0.273 | 2.77 | 1.42 | 0.505 | 0.863 | 0.592 | 1.079 | 0.403 | 0.846 | 0.52 | 1.19 | 3.538 | 0.894 | 0.755 | 0.491 | 0.664 | 0.804 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7866
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.932
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRQYEETELEKRREL,RRERERQEEERRERE,KRRREEWERIERERRQ,KREQREKEERDRERAK,RREIERLEEEERERQR,RRERERLEAMERERQR,KRRLLSDYEQGARKRQE,RRGSRSVLDYSPRQSRR,RRERELLEASLRAKERRE,RKRQELTSKETLERLTRK,RRVREGQERRKREEEERRK,RRKREEEERRKRVDEQRRR,RKREEEERRKRVDEQRRRW,KREEEERRKRVDEQRRRWE,RRRWEQQEVEQLERIRRER,RRWEQQEVEQLERIRRERE,RREQERLEQEQLEAERRER,RRALRAREEQRARERADLDRRAEELREQEKRERERRDRERAEEERRLAELREAEQRNAGQRERERREAQEREERRRNEGWRSRDR
|
10-32
|
0.940
|
16-45
|
0.992
|
— | — |
0.000
|
— | — |
0.412
|
0.175
|
0.024
|
0.717
|
0.098
|
0.099
|
0.068
|
0.025
|
0.354
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003893
|
1.000
|
2.000
|
Hsc_gene_891.t3;Hsc_gene_891.t4
|
Hsc_gene_891.t1;Hsc_gene_891.t2;Hsc_gene_891.t3;Hsc_gene_891.t4
|
— |
A0A1C3NSL9.1 Apical junction molecule [Caenorhabditis elegans]
|
KAF7638822.1 MYND-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0045216
|
GO:0008150_0.968|GO:0005575_0.954|GO:0110165_0.953|GO:0009987_0.947|GO:0005622_0.928|GO:0003674_0.907|GO:0005488_0.907|GO:0016020_0.886|GO:0043226_0.885|GO:0032501_0.884|GO:0005515_0.879|GO:0032502_0.865|GO:0048856_0.865|GO:0016043_0.862|GO:0071840_0.862|GO:0007275_0.844|GO:0043229_0.843|GO:0043228_0.842|GO:0043232_0.842|GO:0032991_0.796|GO:0005856_0.791|GO:0005886_0.787|GO:0071944_0.787|GO:0043227_0.778|GO:0042995_0.730|GO:0098590_0.724|GO:0120025_0.724|GO:0030054_0.722|GO:0009790_0.715|GO:0015630_0.701|GO:0034330_0.698|GO:0009792_0.697|GO:0008092_0.688|GO:0045216_0.675|GO:0043005_0.649|GO:0030990_0.633|GO:0005929_0.628|GO:0005815_0.613|GO:0036477_0.584|GO:0030425_0.581|GO:0097447_0.581|GO:0070161_0.561|GO:0005911_0.558|GO:0036064_0.553|GO:0005912_0.540|GO:0016327_0.540|GO:0043296_0.540|GO:0044292_0.540
|
IPR002893+1192-1235+|IPR038825+48-1359+
|
— | — | — |
PTHR21517+48-1359+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-117;468-1106;1390-1390
|
2.000
|
118-467;1107-1389
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.536
|
164603.720
|
7.229
|
9.000
|
41.942
|
7.194
|
59.928
|
40.072
|
21.727
|
20.216
|
38.561
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
6976.208
|
22073.468
|
10121.133
|
7235.171
|
5338.376
|
7829.254
|
2736.155
|
11856.894
|
2556.637
|
3407.013
|
3042.566
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.354
|
-1.746
|
-0.376
|
-0.471
|
0.568
|
-1.508
|
0.497
|
-1.975
|
— | — | — | — | — |
No JSON data available for plots.