Hg_chrom4_TN10mRNA_8370
Organism: Heterodera glycines Gene Locus: chr4:7475024-7477032 Feature type: polypeptideProtein Sequence
Length: 324
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.861 | 1.077 | 0.786 | 1.171 | 0.566 | 1.029 | 0.735 | 1.08 | 1.029 | 1.335 | 0.468 | 1.271 | 1.972 | 1.068 | 1.701 | 1.235 | 0.708 | 1.169 | 0.237 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7868
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum
|
— | — |
57-84
|
0.999
|
46-79
|
0.997
|
— | — |
0.001
|
— | — |
0.038
|
0.083
|
0.056
|
0.071
|
0.739
|
0.287
|
0.382
|
0.003
|
0.593
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008897
|
1.000
|
1.000
|
Hsc_gene_890.t1
|
Hsc_gene_890.t1
|
— |
Q2HJ61.1 Phospholipid phosphatase 2 [Bos taurus]
|
KAF7638821.1 acidPPc domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006644
|
GO:0008150_0.834|GO:0005575_0.831|GO:0110165_0.827|GO:0009987_0.774|GO:0016020_0.766|GO:0003674_0.694|GO:0071944_0.629|GO:0005886_0.609|GO:0003824_0.546|GO:0008152_0.544|GO:0044238_0.536|GO:0044237_0.531|GO:0016787_0.520|GO:0016788_0.507
|
IPR000326+91-235_96-239+|IPR036938+92-239+|IPR043216+10-248+
|
SM00014+91-235+
|
PF01569+96-239+PAP2_superfamily
|
— |
PTHR10165+10-248+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
290-324
|
1.000
|
1-289
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.881
|
36223.810
|
9.296
|
15.500
|
21.296
|
12.346
|
42.901
|
57.099
|
13.580
|
7.716
|
52.160
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
543.956
|
412.999
|
395.008
|
451.030
|
664.933
|
1010.823
|
922.671
|
1365.912
|
186.658
|
281.046
|
240.594
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.293
|
— |
0.300
|
0.527
|
0.620
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.