Hg_chrom4_TN10mRNA_8371
Organism: Heterodera glycines Gene Locus: chr4:7477137-7481663 Feature type: polypeptideProtein Sequence
Length: 834
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.809 | 0.781 | 0.959 | 0.662 | 0.999 | 0.953 | 0.228 | 1.499 | 1.599 | 1.961 | 0.6 | 1.199 | 1.332 | 0.899 | 1.346 | 1.456 | 0.845 | 0.872 | 0.738 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7869
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.484
|
0.123
|
0.036
|
0.453
|
0.275
|
0.357
|
0.212
|
0.131
|
0.169
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008898
|
1.000
|
1.000
|
Hsc_gene_889.t1
|
Hsc_gene_889.t1
|
— |
Q5ZKU4.1 Integrator complex subunit 2 [Gallus gallus]
|
KAI1724483.1 integrator complex subunit 2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0032039
|
GO:0008150_0.957|GO:0009987_0.916|GO:0008152_0.782|GO:0044238_0.759|GO:0009058_0.753|GO:0044237_0.753|GO:0043170_0.739|GO:0044249_0.734|GO:0009059_0.721|GO:0006139_0.706|GO:0010467_0.705|GO:0034654_0.699|GO:0090304_0.699|GO:0141187_0.692|GO:0016070_0.690|GO:0032774_0.689|GO:0006396_0.673|GO:0016073_0.670|GO:0016180_0.670|GO:0005575_0.656|GO:0110165_0.655|GO:0016020_0.610|GO:0005622_0.588|GO:0043226_0.532|GO:0005737_0.525|GO:0043229_0.513|GO:0065007_0.506|GO:0043227_0.502
|
IPR029321+34-813_50-803+
|
— |
PF14750+50-803+Integrator_complex_subunit_2
|
— |
PTHR28608+34-813+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-834
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
94796.820
|
6.949
|
6.500
|
24.820
|
10.791
|
47.242
|
52.758
|
13.549
|
11.271
|
45.204
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkgrey
|
2112.279
|
972.279
|
1599.735
|
1200.416
|
1206.585
|
989.020
|
2238.731
|
1001.489
|
785.027
|
5199.356
|
3307.501
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.488
|
0.167
|
-0.305
|
— |
-0.273
|
1.189
|
— |
1.304
|
-2.840
|
— | — | — | — |
No JSON data available for plots.