Hg_chrom4_TN10mRNA_8373
Organism: Heterodera glycines Gene Locus: chr4:7490055-7502017 Feature type: polypeptideProtein Sequence
Length: 2,457
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.391 | 0.842 | 0.681 | 0.632 | 0.868 | 2.922 | 0.829 | 1.933 | 0.407 | 1.15 | 0.5 | 0.838 | 0.678 | 1.26 | 1.113 | 1.372 | 1.001 | 0.752 | 0.313 | 0.239 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7871
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRP,RRRRN,RKATSPLVPKAERKSYR,KRTAAVESLPHGLKRKND
|
9-32
|
0.795
|
— | — | — | — |
0.000
|
— | — |
0.851
|
0.075
|
0.013
|
0.337
|
0.032
|
0.028
|
0.025
|
0.018
|
0.083
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002117
|
1.000
|
3.000
|
Hsc_gene_886.t1;Hsc_gene_886.t2;Hsc_gene_886.t3
|
Hsc_gene_886.t1;Hsc_gene_886.t2;Hsc_gene_886.t3
|
— |
P15822.4 Zinc finger protein 40 [Homo sapiens]
|
KAH7728185.1 Zinc fingerC2H2 type family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0008270
|
GO:0008150_0.912|GO:0009987_0.883|GO:0005575_0.869|GO:0110165_0.836|GO:0065007_0.830|GO:0050789_0.820|GO:0050794_0.804|GO:0003674_0.802|GO:0005488_0.802|GO:0005622_0.790|GO:0008152_0.762|GO:0019222_0.762|GO:0044238_0.758|GO:0080090_0.758|GO:0031323_0.757|GO:0044237_0.757|GO:0043226_0.756|GO:0009058_0.751|GO:0009059_0.751|GO:0010467_0.751|GO:0043170_0.751|GO:0044249_0.751|GO:0060255_0.748|GO:0006139_0.747|GO:0034654_0.747|GO:0016070_0.745|GO:0090304_0.745|GO:0032774_0.744|GO:0141187_0.744|GO:0009889_0.740|GO:0010556_0.740|GO:0031326_0.740|GO:0010468_0.736|GO:0019219_0.733|GO:0043229_0.729|GO:0051252_0.726|GO:0006351_0.724|GO:0016020_0.723|GO:0006355_0.719|GO:2001141_0.719|GO:0005634_0.649|GO:0043227_0.649|GO:0043231_0.649|GO:0003676_0.604|GO:0097159_0.604|GO:0048518_0.573|GO:0048522_0.569|GO:0032502_0.554|GO:0048856_0.554|GO:0009893_0.541|GO:0010604_0.541|GO:0048519_0.538|GO:0003677_0.532|GO:0048523_0.529|GO:0009891_0.526|GO:0031325_0.524|GO:0031328_0.522|GO:0010557_0.513|GO:0032501_0.509
|
IPR003604+1216-1250_1794-1828_2413-2446+|IPR013087+626-646_1191-1213_1191-1218_1193-1213_1219-1243_1219-1248_1221-1243_1660-1682_1660-1687_1662-1682_1700-1723_1702-1723_1797-1821_1799-1821_2183-2206_2215-2239_2217-2239_2385-2408_2387-2408_2416-2439_2416-2444_2418-2439+|IPR036236+1190-1238_1795-1823+|IPR051969+1181-1949+
|
SM00355+626-646_1191-1213_1219-1243_1660-1682_1700-1723_1797-1821_2183-2206_2215-2239_2385-2408_2416-2439+|SM00451+1216-1250_1794-1828_2413-2446+
|
PF00096+1191-1213+Zinc_finger,_C2H2_type|PF12874+1799-1821+Zinc-finger_of_C2H2_type
|
G3DSA:3.30.160.60:FF:000594+1190-1215+Transcription_factor_HIVEP2
|
PTHR45944+1181-1949+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-188;346-889;1002-1184;1236-1536;1881-2178;2232-2381;2421-2457
|
6.000
|
189-345;890-1001;1185-1235;1537-1880;2179-2231;2382-2420
|
1bbo_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
263535.370
|
7.465
|
42.500
|
21.571
|
7.530
|
52.300
|
47.700
|
12.617
|
8.954
|
55.352
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
3797.927
|
5897.783
|
6683.145
|
4565.935
|
3354.742
|
4349.734
|
3482.236
|
5504.932
|
3043.111
|
1644.159
|
2243.710
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.507
|
-0.442
|
-0.476
|
0.388
|
-0.310
|
— |
-0.521
|
— | — | — | — | — |
No JSON data available for plots.