Hg_chrom4_TN10mRNA_8375
Organism: Heterodera glycines Gene Locus: chr4:7502475-7505461 Feature type: polypeptideProtein Sequence
Length: 769
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.27 | 0.817 | 1.017 | 1.569 | 1.04 | 1.067 | 0.991 | 1.235 | 0.462 | 0.738 | 0.611 | 1.071 | 1.264 | 1.45 | 1.486 | 1.43 | 0.789 | 0.67 | 0.5 | 0.459 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7872
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.820
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
RRGKSAAKGKSQRRRRKRF,VAKRRGKSAAKGKSQRRRRKR
|
— | — |
47-67
|
0.974
|
1-29
|
0.946
|
1.000
|
0.000
|
0.000
|
0.332
|
0.212
|
0.029
|
0.276
|
0.074
|
0.036
|
0.173
|
0.071
|
0.255
|
0.927
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002118
|
2.000
|
2.000
|
Hsc_gene_885.t1;Hsc_gene_885.t2
|
Hsc_gene_885.t1;Hsc_gene_885.t2
|
— |
Q10125.4 Uncharacterized protein F52C9.5 [Caenorhabditis elegans]
|
KAI1716273.1 PAN domain-containing protein [Ditylenchus destructor]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003609+103-181_107-176_110-165_378-471_382-470_404-471_480-570_481-572_500-569+|IPR052774+504-576+
|
SM00473+103-181_382-470_480-570+
|
PF00024+110-165_404-471_500-569+PAN_domain
|
— |
PTHR47327+504-576+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
171-397;597-732
|
3.000
|
1-170;398-596;733-769
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.861
|
82792.220
|
6.940
|
5.500
|
25.618
|
9.233
|
48.114
|
51.886
|
13.784
|
11.834
|
59.688
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
170.875
|
132.275
|
84.004
|
53.638
|
34.456
|
68.888
|
33.194
|
99.906
|
21.371
|
541.665
|
318.682
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.885
|
-1.439
|
-0.538
|
-0.667
|
1.012
|
-1.048
|
0.431
|
-1.452
|
-4.812
|
— | — | — | — |