Hg_chrom4_TN10mRNA_8376
Organism: Heterodera glycines Gene Locus: chr4:7505906-7509101 Feature type: polypeptideProtein Sequence
Length: 472
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.813 | 0.936 | 1.31 | 1.023 | 0.918 | 0.815 | 0.984 | 1.589 | 0.942 | 0.973 | 0.578 | 1.246 | 1.53 | 0.937 | 1.513 | 1.211 | 0.695 | 1.284 | 0.163 | 0.623 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7873
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KRSR
|
— | — | — | — |
1-25
|
0.983
|
0.999
|
1.000
|
1.000
|
0.102
|
0.013
|
0.017
|
0.230
|
0.201
|
0.293
|
0.421
|
0.081
|
0.811
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003894
|
2.000
|
1.000
|
Hsc_gene_884.t1
|
Hsc_gene_884.t1
|
— |
Q21540.2 Cuticlin-6 [Caenorhabditis elegans]
|
KAF7638840.1 ZP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.902|GO:0110165_0.902|GO:0071944_0.794|GO:0030312_0.567|GO:0031012_0.547|GO:0062023_0.547|GO:0060102_0.540
|
IPR001507+40-286_40-290+|IPR051962+11-432+
|
SM00241+40-290+
|
— | — |
PTHR22907+11-432+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-472
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
51994.660
|
6.548
|
0.500
|
27.119
|
11.017
|
47.034
|
52.966
|
14.407
|
12.712
|
55.508
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
218.547
|
270.260
|
175.002
|
91.898
|
64.242
|
95.915
|
297.524
|
87.854
|
38.276
|
521.423
|
314.360
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.857
|
-1.693
|
-0.820
|
-0.546
|
0.592
|
1.644
|
— |
1.904
|
— | — | — | — | — |