Hg_chrom4_TN10mRNA_8378
Organism: Heterodera glycines Gene Locus: chr4:7513525-7517110 Feature type: polypeptideProtein Sequence
Length: 482
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.772 | 1.11 | 1.32 | 0.715 | 1.141 | 1.277 | 0.716 | 0.934 | 1.107 | 1.43 | 0.817 | 1.709 | 1.441 | 0.838 | 1.524 | 0.948 | 0.442 | 1.037 | 1.277 | 0.244 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7874
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.375
|
0.367
|
0.015
|
0.730
|
0.134
|
0.181
|
0.226
|
0.044
|
0.265
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008900
|
1.000
|
1.000
|
Hsc_gene_883.t1
|
Hsc_gene_883.t1
|
— |
Q59KI0.2 UTP--glucose-1-phosphate uridylyltransferase [Candida albicans SC5314]
|
KAI1724492.1 UTP--glucose-1-phosphate uridylyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003983|GO:0006011|GO:0070569
|
GO:0008150_0.867|GO:0005575_0.833|GO:0110165_0.821|GO:0009987_0.740|GO:0005622_0.708|GO:0016020_0.677|GO:0005737_0.635|GO:0003674_0.623|GO:0008152_0.593|GO:0043226_0.580|GO:0043229_0.571|GO:0044238_0.564
|
IPR002618+35-447+|IPR016267+2-472_33-461+|IPR029044+19-370_35-454+
|
— |
PF01704+35-447+UTP--glucose-1-phosphate_uridylyltransferase
|
G3DSA:3.90.550.10:FF:000002+6-370+UTP--glucose-1-phosphate_uridylyltransferase
|
PTHR43511+33-461+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19;474-482
|
1.000
|
20-473
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
54713.580
|
6.257
|
-1.500
|
28.838
|
9.544
|
47.925
|
52.075
|
14.730
|
14.108
|
47.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
432.716
|
164.600
|
172.655
|
621.494
|
730.063
|
211.343
|
105.856
|
232.913
|
95.020
|
982.272
|
602.021
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.780
|
1.958
|
0.200
|
-1.770
|
-0.991
|
— |
-0.996
|
— | — | — | — | — |
No JSON data available for plots.