Hg_chrom4_TN10mRNA_8379
Organism: Heterodera glycines Gene Locus: chr4:7519401-7522267 Feature type: polypeptideProtein Sequence
Length: 434
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.884 | 1.018 | 0.503 | 1.112 | 0.998 | 1.3 | 0.576 | 1.037 | 0.819 | 1.681 | 0.454 | 1.084 | 1.536 | 0.665 | 1.411 | 1.218 | 1.02 | 1.047 | 1.95 | 0.881 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7875
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRRS,RSLKRSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.134
|
0.188
|
0.014
|
0.098
|
0.243
|
0.293
|
0.368
|
0.018
|
0.791
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008901
|
1.000
|
1.000
|
Hsc_gene_882.t1
|
Hsc_gene_882.t1
|
— |
Q23497.2 Galanin-like G-protein coupled receptor npr-9 [Caenorhabditis elegans]
|
KAH7700014.1 Protein NPR-9 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.901|GO:0009987_0.828|GO:0065007_0.764|GO:0050789_0.751|GO:0050794_0.719|GO:0005575_0.707|GO:0110165_0.707|GO:0003674_0.705|GO:0050896_0.705|GO:0051716_0.699|GO:0007154_0.683|GO:0023052_0.676|GO:0007165_0.659|GO:0007186_0.594|GO:0071944_0.579|GO:0016020_0.578|GO:0005886_0.575|GO:0005488_0.566|GO:0060089_0.549|GO:0038023_0.542|GO:0004888_0.513
|
IPR000276+1-252_5-26_50-72_188-212_234-260+|IPR017452+1-252+
|
— |
PF00001+1-252+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR45695+1-354+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
356-434
|
1.000
|
1-355
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
49371.750
|
8.136
|
9.500
|
20.737
|
13.134
|
44.931
|
55.069
|
11.982
|
8.756
|
47.926
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
459.289
|
749.020
|
641.984
|
227.670
|
177.132
|
89.706
|
598.978
|
358.340
|
859.220
|
298.912
|
539.044
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.452
|
-1.855
|
-1.387
|
-0.392
|
-0.969
|
2.750
|
1.901
|
0.882
|
— | — | — | — | — |
No JSON data available for plots.