Hg_chrom4_TN10mRNA_8381
Organism: Heterodera glycines Gene Locus: chr4:7524089-7528416 Feature type: polypeptideProtein Sequence
Length: 585
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.113 | 0.676 | 0.653 | 0.589 | 0.741 | 0.701 | 0.814 | 1.026 | 1.747 | 1.271 | 0.648 | 1.307 | 2.089 | 0.789 | 1.081 | 1.319 | 0.841 | 1.036 | 1.578 | 0.654 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7877
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRKR,RKRK,KKESQFEEISLDSRKGRRE,RREKTDEGESSREISERKR
|
45-75
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.096
|
0.211
|
0.013
|
0.263
|
0.416
|
0.390
|
0.254
|
0.033
|
0.668
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003895
|
1.000
|
2.000
|
Hsc_gene_879.t1;Hsc_gene_879.t2
|
Hsc_gene_879.t1;Hsc_gene_879.t2;Hsc_gene_880.t1;Hsc_gene_880.t2
|
— |
A8WGF7.2 Protein spinster homolog 1 [Xenopus tropicalis]
|
KAI6199381.1 Protein spinster-like protein 1 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.865|GO:0009987_0.809|GO:0005575_0.739|GO:0110165_0.739|GO:0016020_0.700|GO:0006810_0.610|GO:0051179_0.610|GO:0051234_0.610|GO:0071944_0.547|GO:0005886_0.541
|
IPR011701+68-486+|IPR020846+64-549+|IPR036259+55-538_62-542+|IPR044770+61-556_65-536+
|
— |
PF07690+68-486+Major_Facilitator_Superfamily
|
— |
PTHR23505+61-556+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-37;555-585
|
1.000
|
38-554
|
8jhq_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
64765.170
|
8.879
|
15.000
|
19.658
|
13.846
|
39.658
|
60.342
|
11.624
|
8.034
|
49.915
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
1127.039
|
700.245
|
1007.575
|
731.719
|
556.038
|
701.587
|
903.432
|
930.484
|
1110.785
|
2023.551
|
1632.366
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.296
|
— |
-0.353
|
-0.428
|
0.350
|
0.374
|
0.302
|
— | — | — | — | — | — |
No JSON data available for plots.