Hg_chrom4_TN10mRNA_8383
Organism: Heterodera glycines Gene Locus: chr4:7530234-7533494 Feature type: polypeptideProtein Sequence
Length: 792
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.573 | 1.615 | 0.735 | 0.522 | 1.578 | 1.198 | 0.646 | 0.631 | 1.852 | 1.297 | 1.664 | 1.931 | 1.543 | 0.437 | 0.876 | 0.667 | 0.828 | 0.555 | 0.971 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7879
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
GKSRKKREKRIKAAINK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.520
|
0.124
|
0.007
|
0.564
|
0.079
|
0.102
|
0.109
|
0.016
|
0.153
|
0.186
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002119
|
1.000
|
3.000
|
Hsc_gene_878.t1;Hsc_gene_878.t2;Hsc_gene_878.t3
|
Hsc_gene_878.t1;Hsc_gene_878.t2;Hsc_gene_878.t3
|
— | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
OWZ17971
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016779|GO:1990817
|
GO:0005575_0.750|GO:0110165_0.746|GO:0005622_0.708|GO:0016020_0.649|GO:0043226_0.633|GO:0043229_0.615|GO:0008150_0.609|GO:0043227_0.570|GO:0043231_0.552|GO:0003674_0.548
|
IPR002934+310-344+|IPR007012+501-617+|IPR043519+265-418_287-450+
|
— |
PF01909+310-344+Nucleotidyltransferase_domain|PF04928+501-617+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+216-357+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-31
|
1.000
|
32-792
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
91993.420
|
9.079
|
19.000
|
30.051
|
10.859
|
51.389
|
48.611
|
16.540
|
13.510
|
38.510
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
389.911
|
9.710
|
68.670
|
131.941
|
53.831
|
19.733
|
51.522
|
12.474
|
521.910
|
1183.973
|
900.232
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.588
|
3.626
|
1.053
|
-1.321
|
-1.436
|
1.395
|
— |
2.193
|
— | — |
-4.287
|
— | — |
No JSON data available for plots.