Hg_chrom4_TN10mRNA_8388
Organism: Heterodera glycines Gene Locus: chr4:7542459-7545003 Feature type: polypeptideProtein Sequence
Length: 261
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.802 | 0.535 | 1.115 | 0.528 | 0.894 | 0.786 | 0.411 | 0.383 | 1.958 | 1.346 | 0.929 | 1.803 | 1.171 | 0.737 | 1.72 | 1.259 | 0.942 | 1.451 | 0.589 | 0.338 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7883
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum
|
— | — |
10-50
|
0.948
|
— | — | — | — |
0.000
|
— | — |
0.041
|
0.167
|
0.005
|
0.148
|
0.782
|
0.341
|
0.399
|
0.022
|
0.595
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000856
|
1.000
|
5.000
|
Hsc_gene_875.t1;Hsc_gene_875.t2;Hsc_gene_875.t3;Hsc_gene_875.t4;Hsc_gene_875.t5
|
Hsc_gene_875.t1;Hsc_gene_875.t2;Hsc_gene_875.t3;Hsc_gene_875.t5
|
— |
Q21190.2 Protein unc-1 [Caenorhabditis elegans]
|
KAF7638833.1 Protein unc-1 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005886|GO:0016020
|
GO:0005575_0.937|GO:0110165_0.936|GO:0016020_0.882|GO:0071944_0.819|GO:0005886_0.811|GO:0008150_0.776|GO:0009987_0.585|GO:0043226_0.551|GO:0005622_0.507|GO:0003674_0.502|GO:0043227_0.502
|
IPR001107+58-217_63-233+|IPR001972+65-87_114-135_149-166_169-192_193-211_212-233_237-260+|IPR018080+173-201+|IPR036013+91-224_97-207+|IPR043202+35-251+
|
SM00244+58-217+
|
PF01145+63-233+SPFH_domain_/_Band_7_family
|
G3DSA:3.30.479.30:FF:000002+97-207+band_7_protein_AGAP004871
|
PTHR10264+35-251+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-261
|
9oh9_P
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
29387.460
|
9.926
|
9.000
|
26.820
|
6.897
|
46.743
|
53.257
|
15.326
|
11.494
|
48.276
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
457.486
|
675.731
|
1257.488
|
329.391
|
141.479
|
141.301
|
185.839
|
1407.283
|
121.018
|
358.795
|
256.891
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
-1.174
|
-1.823
|
-1.252
|
— |
0.406
|
3.213
|
-2.779
|
— | — | — | — | — |
No JSON data available for plots.