Hg_chrom4_TN10mRNA_8389
Organism: Heterodera glycines Gene Locus: chr4:7559003-7560677 Feature type: polypeptideProtein Sequence
Length: 362
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.028 | 1.413 | 0.854 | 0.762 | 1.151 | 0.992 | 0.921 | 1.105 | 1.473 | 1.419 | 0.921 | 0.487 | 1.611 | 0.637 | 0.62 | 0.75 | 0.86 | 1.13 | 0.212 | 0.894 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7884
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.352
|
0.260
|
0.023
|
0.811
|
0.272
|
0.190
|
0.272
|
0.056
|
0.141
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008905
|
1.000
|
1.000
|
Hsc_gene_867.t1
|
Hsc_gene_867.t1
|
— |
Q9SF85.1 Adenosine kinase 1 [Arabidopsis thaliana]
|
KAH7730699.1 Protein R07H5.8 [Aphelenchus avenae]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004001|GO:0006166|GO:0016301
|
GO:0008150_0.854|GO:0005575_0.788|GO:0110165_0.786|GO:0009987_0.777|GO:0003674_0.721|GO:0008152_0.694|GO:0005622_0.683|GO:0005737_0.683|GO:0044237_0.667|GO:0044238_0.667|GO:0016020_0.658|GO:0009058_0.607|GO:0044281_0.607|GO:0006139_0.571|GO:0034654_0.562|GO:0055086_0.557|GO:0006793_0.553|GO:0006796_0.553|GO:0003824_0.552
|
IPR001805+11-358_80-89_132-147_170-196_281-300+|IPR002173+310-323+|IPR011611+54-356+|IPR029056+15-354_16-347+
|
— |
PF00294+54-356+pfkB_family_carbohydrate_kinase
|
G3DSA:3.40.1190.20:FF:000076+63-361+Adenosine_kinase
|
PTHR45769+11-358+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-362
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
39737.410
|
5.425
|
-5.000
|
22.928
|
11.326
|
43.370
|
56.630
|
11.326
|
11.602
|
50.829
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
2576.173
|
931.277
|
2037.085
|
3793.164
|
4845.628
|
4073.391
|
3078.855
|
2035.921
|
1374.707
|
2441.481
|
1984.292
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.901
|
1.889
|
1.005
|
0.321
|
-0.236
|
-0.394
|
-1.107
|
0.739
|
— | — | — | — | — |
No JSON data available for plots.