SCN Proteipedia

Hg_chrom4_TN10mRNA_8390

Organism: Heterodera glycines Gene Locus: chr4:7562277-7569253 Feature type: polypeptide

Protein Sequence

Length: 1,237

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.743	1.166	1.117	0.613	1.442	0.912	0.52	0.849	1.365	1.311	1.249	1.141	0.966	0.964	1.237	1.062	0.729	1.053	0.497	0.69	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7885	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKK,KHKKGPKQSKK,KRKDADVHSPEGSESRRAK,RKDADVHSPEGSESRRAKV	—	—	—	—	—	—	0.000	—	—	0.952	0.096	0.018	0.236	0.027	0.027	0.029	0.004	0.017	0.006

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008906	1.000	1.000	Hsc_gene_866.t1	Hsc_gene_866.t1	—	P09884.2 DNA polymerase alpha catalytic subunit [Homo sapiens]	KAH7725302.1 DNA polymerase alpha catalytic subunit [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0003676\|GO:0003677\|GO:0003887\|GO:1902975	GO:0008150_0.962\|GO:0009987_0.918\|GO:0005575_0.849\|GO:0110165_0.849\|GO:0003674_0.812\|GO:0005622_0.799\|GO:0008152_0.781\|GO:0044238_0.781\|GO:0016020_0.766\|GO:0043170_0.764\|GO:0044237_0.749\|GO:0009058_0.746\|GO:0043226_0.744\|GO:0044249_0.737\|GO:0006139_0.735\|GO:0009059_0.727\|GO:0043229_0.722\|GO:0090304_0.718\|GO:0034654_0.707\|GO:0141187_0.704\|GO:0006259_0.671\|GO:0043227_0.671\|GO:0071897_0.653\|GO:0043231_0.649\|GO:0003824_0.648\|GO:0016740_0.604\|GO:0016772_0.580\|GO:0140640_0.577\|GO:0140097_0.572\|GO:0016779_0.571\|GO:0034061_0.566\|GO:0005634_0.562\|GO:0003887_0.557\|GO:0043228_0.536\|GO:0043232_0.536\|GO:0032991_0.531\|GO:0006260_0.504	IPR006133+395-638+\|IPR006134+708-1195+\|IPR006172+459-982_833-846_916-928_968-976+\|IPR012337+364-730+\|IPR017964+970-978+\|IPR023211+815-1026+\|IPR036397+459-764+\|IPR042087+1045-1225+\|IPR043502+808-1208+\|IPR045846+809-1210+	SM00486+459-982+	PF00136+708-1195+DNA_polymerase_family_B\|PF03104+395-638+DNA_polymerase_family_B,_exonuclease_domain	G3DSA:1.10.132.60:FF:000004+1045-1224+DNA_polymerase	PTHR45861+5-136+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-253;741-819	2.000	254-740;820-1237	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.651	139922.040	6.855	4.500	30.800	8.165	51.253	48.747	16.006	14.794	47.534

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	1314.332	253.778	387.259	1232.911	1615.018	894.621	1118.529	358.818	146.292	3442.631	2029.915

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.379	2.143	1.781	0.358	-0.838	0.333	-1.432	1.786	-4.670	3.265	—	—	—

No JSON data available for plots.

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