Hg_chrom4_TN10mRNA_8393
Organism: Heterodera glycines Gene Locus: chr4:7580590-7582409 Feature type: polypeptideProtein Sequence
Length: 400
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.785 | 1.337 | 0.864 | 0.517 | 1.708 | 1.026 | 0.625 | 0.875 | 1.167 | 1.115 | 1.25 | 1.618 | 1.667 | 0.769 | 1.173 | 0.929 | 1.148 | 0.455 | 1.154 | 0.515 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7888
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.833
|
0.083
|
0.003
|
0.518
|
0.011
|
0.028
|
0.046
|
0.059
|
0.043
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008909
|
1.000
|
1.000
|
Hsc_gene_862.t1
|
Hsc_gene_862.t1
|
— | — |
KAF7631037.1 BUB1 N-terminal domain-containing protein [Meloidogyne graminicola]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007094
|
— |
IPR013212+41-166_45-165_49-212+|IPR015661+8-340+
|
SM00777+41-166+
|
PF08311+45-165+Mad3/BUB1_homology_region_1
|
— |
PTHR14030+8-340+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;315-400
|
1.000
|
2-314
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.604
|
45874.920
|
6.409
|
-0.500
|
30.750
|
11.000
|
54.000
|
46.000
|
15.750
|
15.000
|
44.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
837.827
|
285.288
|
393.664
|
483.559
|
598.152
|
627.388
|
1146.880
|
507.037
|
136.147
|
2047.644
|
1228.431
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.234
|
0.624
|
0.407
|
0.276
|
— |
0.880
|
-0.417
|
1.322
|
-4.011
|
— | — | — | — |
No JSON data available for plots.