Hg_chrom4_TN10mRNA_8394
Organism: Heterodera glycines Gene Locus: chr4:7582509-7585272 Feature type: polypeptideProtein Sequence
Length: 444
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.838 | 1.152 | 0.819 | 1.476 | 1.164 | 1.155 | 0.938 | 1.126 | 0.901 | 0.73 | 0.99 | 1.06 | 1.001 | 1.213 | 0.919 | 1.384 | 1.182 | 0.717 | 0.866 | 0.729 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7889
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKRKKTGPGF,RKKTGPGFGGNVPGRTARK
|
— | — |
24-61
|
0.962
|
— | — |
0.000
|
— | — |
0.992
|
0.019
|
0.134
|
0.103
|
0.021
|
0.025
|
0.020
|
0.015
|
0.020
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008910
|
1.000
|
1.000
|
Hsc_gene_861.t1
|
Hsc_gene_861.t1
|
— |
Q09477.2 Zinc finger protein dpff-1 [Caenorhabditis elegans]
|
KAI1716355.1 PHD-finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.855|GO:0005575_0.764|GO:0110165_0.760|GO:0005622_0.678|GO:0009987_0.646|GO:0016020_0.621|GO:0043226_0.613|GO:0043229_0.592|GO:0043227_0.563|GO:0043231_0.544|GO:0032502_0.515|GO:0048856_0.515|GO:0005634_0.507
|
IPR001965+317-372_373-419+|IPR011011+312-372_358-421+|IPR013083+312-434+|IPR013087+271-299_273-294+|IPR019787+315-374_318-371_371-421_374-418+|IPR025750+36-107+
|
SM00249+317-372_373-419+
|
PF00628+318-371_374-418+PHD-finger|PF14051+36-107+DPF1-3,_N-terminal
|
G3DSA:3.30.40.10:FF:000005+312-430+zinc_finger_protein_isoform_X1
|
PTHR45888+301-423+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
112-260;434-444
|
2.000
|
1-111;261-433
|
6lth_R
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
48502.290
|
6.938
|
3.000
|
24.775
|
9.459
|
51.126
|
48.874
|
13.288
|
11.486
|
56.757
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1415.782
|
917.130
|
1113.374
|
1059.757
|
1134.182
|
1063.027
|
1318.534
|
1225.517
|
1998.455
|
1758.384
|
1861.272
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.322
|
— |
0.249
|
— | — | — | — | — |
No JSON data available for plots.