Hg_chrom4_TN10mRNA_8395
Organism: Heterodera glycines Gene Locus: chr4:7585632-7586428 Feature type: polypeptideProtein Sequence
Length: 68
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.197 | 0.684 | 0.535 | 0.0 | 3.186 | 2.262 | 1.05 | 0.0 | 0.0 | 0.397 | 0.668 | 2.595 | 1.225 | 1.131 | 2.101 | 0.63 | 0.241 | 0.446 | 3.394 | 0.433 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7890
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.597
|
0.372
|
0.045
|
0.555
|
0.037
|
0.023
|
0.034
|
0.024
|
0.047
|
0.354
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008911
|
1.000
|
1.000
|
Hsc_gene_860.t1
|
Hsc_gene_860.t1
|
— | — |
KAF7637022.1 HMG box domain-containing protein [Meloidogyne graminicola]
|
No
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.784|GO:0110165_0.778|GO:0008150_0.751|GO:0065007_0.719|GO:0050789_0.712|GO:0009987_0.689|GO:0005622_0.681|GO:0050794_0.677|GO:0003674_0.656|GO:0005488_0.656|GO:0016020_0.615|GO:0043226_0.600|GO:0043229_0.593|GO:0043227_0.541|GO:0043231_0.534
|
IPR009071+1-57_1-67_3-56+|IPR036910+2-55_4-52+
|
SM00398+1-67+
|
PF00505+3-56+HMG_(high_mobility_group)_box
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-68
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
7973.700
|
4.394
|
-5.000
|
36.765
|
10.294
|
54.412
|
45.588
|
14.706
|
22.059
|
39.706
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
7780.183
|
87371.166
|
892.554
|
586.399
|
175.399
|
173.025
|
310.091
|
177.705
|
222.039
|
239.395
|
231.957
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-6.845
|
-7.354
|
— |
-1.774
|
— |
0.853
|
— |
0.946
|
— | — | — | — | — |
No JSON data available for plots.