Hg_chrom4_TN10mRNA_8396
Organism: Heterodera glycines Gene Locus: chr4:7590325-7594032 Feature type: polypeptideProtein Sequence
Length: 458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.269 | 0.508 | 0.556 | 0.376 | 1.164 | 1.176 | 0.676 | 0.655 | 1.213 | 1.387 | 0.463 | 1.67 | 1.031 | 1.134 | 1.604 | 1.497 | 0.823 | 0.992 | 0.84 | 0.578 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7891
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum
|
— |
RRFTLNPLIFAKEEREMRR
|
26-57
|
0.979
|
78-98
|
0.991
|
— | — |
0.000
|
— | — |
0.061
|
0.227
|
0.007
|
0.151
|
0.610
|
0.503
|
0.493
|
0.020
|
0.573
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008912
|
1.000
|
1.000
|
Hsc_gene_859.t1
|
Hsc_gene_859.t1;Hsc_gene_859.t2
|
— |
Q19958.4 Stomatin-2 [Caenorhabditis elegans]
|
KAF7631035.1 Stomatin-2, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005886|GO:0016020
|
GO:0005575_0.941|GO:0110165_0.941|GO:0016020_0.901|GO:0005886_0.881|GO:0071944_0.881|GO:0008150_0.806|GO:0009987_0.649|GO:0043226_0.561|GO:0003674_0.557|GO:0065007_0.555|GO:0050789_0.532|GO:0043227_0.513
|
IPR001107+228-387_231-403+|IPR001972+235-257_284-305_319-336_339-362_363-381_382-403_407-430+|IPR018080+343-371+|IPR036013+261-394_267-377+|IPR043202+89-458+
|
SM00244+228-387+
|
PF01145+231-403+SPFH_domain_/_Band_7_family
|
G3DSA:3.30.479.30:FF:000002+267-377+band_7_protein_AGAP004871
|
PTHR10264+89-458+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-121
|
1.000
|
122-458
|
9oh9_P
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
50241.680
|
8.592
|
7.000
|
22.271
|
8.079
|
44.541
|
55.459
|
12.227
|
10.044
|
50.873
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
733.201
|
3269.979
|
1576.189
|
653.511
|
147.972
|
148.810
|
165.937
|
734.090
|
149.811
|
584.212
|
398.040
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.282
|
-2.460
|
-1.161
|
-2.175
|
— | — |
2.202
|
-2.007
|
— | — | — | — | — |
No JSON data available for plots.