Hg_chrom4_TN10mRNA_8399
Organism: Heterodera glycines Gene Locus: chr4:7601072-7602873 Feature type: polypeptideProtein Sequence
Length: 291
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.959 | 0.559 | 0.875 | 0.829 | 0.401 | 1.322 | 0.818 | 0.859 | 1.375 | 1.486 | 0.417 | 3.032 | 2.291 | 0.595 | 1.052 | 0.982 | 0.789 | 1.041 | 1.322 | 1.213 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7894
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
6-28
|
0.973
|
— | — | — | — |
0.000
|
— | — |
0.095
|
0.098
|
0.031
|
0.108
|
0.228
|
0.473
|
0.274
|
0.008
|
0.806
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008914
|
1.000
|
1.000
|
Hsc_gene_855.t1
|
Hsc_gene_855.t1
|
— |
Q9NGJ7.1 Clc-like protein 5 [Caenorhabditis elegans]
|
KAI1716345.1 clc-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.961|GO:0009987_0.915|GO:0005575_0.912|GO:0071944_0.912|GO:0110165_0.912|GO:0005886_0.903|GO:0016020_0.903|GO:0007155_0.689|GO:0098609_0.686|GO:0090136_0.670
|
IPR010761+10-207+|IPR050579+13-202+
|
— |
PF07062+10-207+Clc-like
|
G3DSA:1.20.140.150:FF:000042+7-200+Clc-like_protein_2
|
PTHR10671+13-202+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-291
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.639
|
32937.580
|
7.897
|
4.500
|
16.838
|
15.808
|
36.082
|
63.918
|
9.622
|
7.216
|
46.392
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
220.423
|
399.227
|
345.329
|
321.207
|
533.862
|
243.752
|
278.258
|
185.300
|
58.619
|
55.285
|
56.714
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.437
|
-0.451
|
— |
0.700
|
-1.116
|
— |
-0.503
|
0.730
|
— | — | — | — | — |
No JSON data available for plots.