SCN Proteipedia

Hg_chrom4_TN10mRNA_8402

Organism: Heterodera glycines Gene Locus: chr4:7609699-7612416 Feature type: polypeptide

Protein Sequence

Length: 510

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.889	1.231	0.856	0.744	0.882	1.207	0.49	1.569	1.133	1.696	0.564	1.038	1.144	0.98	1.281	1.373	0.9	1.04	0.452	0.519	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7897	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|nucleus	—	—	—	—	47-74	1.000	—	—	0.000	—	—	0.590	0.117	0.008	0.504	0.058	0.134	0.267	0.022	0.053	0.056

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008917	1.000	1.000	Hsc_gene_852.t1	Hsc_gene_852.t1	—	Q91857.3 Transcription initiation factor TFIID subunit 6 [Xenopus laevis]	KAF7633107.1 TAF domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000124\|GO:0005669\|GO:0006367\|GO:0016251\|GO:0046695\|GO:0046982	GO:0008150_0.956\|GO:0009987_0.904\|GO:0005575_0.806\|GO:0110165_0.799\|GO:0005622_0.734\|GO:0016020_0.722\|GO:0043226_0.679\|GO:0043229_0.663\|GO:0008152_0.662\|GO:0043170_0.658\|GO:0044238_0.652\|GO:0044237_0.650\|GO:0009058_0.642\|GO:0043227_0.632\|GO:0009059_0.631\|GO:0044249_0.631\|GO:0010467_0.619\|GO:0043231_0.615\|GO:0006139_0.612\|GO:0090304_0.601\|GO:0034654_0.600\|GO:0141187_0.596\|GO:0016070_0.594\|GO:0032774_0.592\|GO:0065007_0.592\|GO:0050789_0.590\|GO:0006351_0.582\|GO:0050794_0.576\|GO:0003674_0.573\|GO:0006366_0.568\|GO:0032991_0.547\|GO:0005634_0.539\|GO:0005737_0.530	IPR004823+27-90_31-89+\|IPR009072+26-90+\|IPR011442+214-415_215-440+\|IPR016024+301-428+\|IPR037796+31-429+\|IPR046344+213-433+	SM00803+27-90+	PF02969+31-89+TATA_box_binding_protein_associated_factor_(TAF)\|PF07571+214-415+TAF6_C-terminal_HEAT_repeat_domain	G3DSA:1.25.40.770:FF:000001+257-429+Transcription_initiation_factor_TFIID_subunit_6	PTHR10221+31-429+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-13;491-510	1.000	14-490	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.754	56729.920	7.489	8.000	23.137	9.608	48.235	51.765	13.137	10.000	50.980

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	magenta	709.649	690.437	604.734	596.148	830.920	565.923	1925.779	571.703	256.851	742.459	534.341

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.422	-0.349	—	0.447	-0.539	1.778	—	1.895	—	—	—	—	6.622

No JSON data available for plots.

Back to Browser