Hg_chrom4_TN10mRNA_8403
Organism: Heterodera glycines Gene Locus: chr4:7612826-7613741 Feature type: polypeptideProtein Sequence
Length: 191
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.913 | 0.852 | 1.238 | 0.181 | 1.309 | 0.537 | 0.499 | 0.524 | 1.28 | 1.203 | 1.507 | 1.54 | 1.454 | 0.604 | 0.962 | 0.748 | 0.772 | 1.269 | 2.014 | 1.386 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7898
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.171
|
0.302
|
0.010
|
0.047
|
0.924
|
0.181
|
0.582
|
0.024
|
0.057
|
0.011
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008918
|
1.000
|
1.000
|
Hsc_gene_851.t1
|
Hsc_gene_851.t1
|
— |
Q9XWW1.1 Signal peptidase complex subunit 2 [Caenorhabditis elegans]
|
KAI1724422.1 microsomal signal peptidase 25 kDa subunit (SPC25) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005787|GO:0006465|GO:0016020
|
GO:0005575_0.902|GO:0110165_0.902|GO:0016020_0.842|GO:0005622_0.824|GO:0005737_0.824|GO:0071944_0.781|GO:0043226_0.769|GO:0005886_0.767|GO:0043229_0.758|GO:0043227_0.745|GO:0043231_0.745|GO:0005773_0.671|GO:0012505_0.643
|
IPR009582+1-189_27-184+
|
— |
PF06703+27-184+Microsomal_signal_peptidase_25_kDa_subunit_(SPC25)
|
— |
PTHR13085+1-189+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23
|
1.000
|
24-191
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
22148.550
|
7.165
|
1.000
|
30.366
|
13.613
|
46.073
|
53.927
|
15.707
|
14.660
|
44.503
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
4036.983
|
1725.824
|
2939.302
|
2715.756
|
2754.929
|
3070.052
|
2109.660
|
2887.445
|
11221.263
|
2419.741
|
6191.822
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.540
|
0.517
|
— | — |
0.171
|
-0.533
|
— |
-0.313
|
2.110
|
-1.882
|
— | — | — |
No JSON data available for plots.