Hg_chrom4_TN10mRNA_8404
Organism: Heterodera glycines Gene Locus: chr4:7614065-7616278 Feature type: polypeptideProtein Sequence
Length: 369
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.725 | 1.513 | 0.148 | 0.093 | 0.136 | 3.266 | 0.581 | 0.271 | 1.265 | 0.659 | 1.191 | 1.913 | 1.129 | 1.459 | 2.655 | 0.89 | 0.755 | 1.273 | 0.0 | 0.478 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7899
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.469
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKALNKSNVSPRGKRF,KRLIRGNIAKGKPFIRKQINGQNQTKKFGLKRVGINVRRGRPLRKSNRVVVMRK
|
63-95
|
0.979
|
— | — | — | — |
0.000
|
— | — |
0.730
|
0.189
|
0.004
|
0.406
|
0.027
|
0.031
|
0.037
|
0.008
|
0.081
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008919
|
1.000
|
1.000
|
Hsc_gene_850.t1
|
Hsc_gene_850.t1
|
— | — |
CAD2172696.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78;188-369
|
1.000
|
79-187
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.948
|
42452.670
|
12.896
|
72.000
|
23.035
|
6.233
|
53.117
|
46.883
|
21.409
|
1.626
|
45.528
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
9068.237
|
13358.275
|
11204.849
|
8508.347
|
8146.288
|
9623.139
|
8307.215
|
14932.597
|
6443.186
|
7060.879
|
6796.154
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.483
|
-0.788
|
-0.289
|
-0.095
|
0.255
|
-0.202
|
— |
-0.707
|
— | — | — | — | — |
No JSON data available for plots.