Hg_chrom4_TN10mRNA_8405
Organism: Heterodera glycines Gene Locus: chr4:7616361-7618845 Feature type: polypeptideProtein Sequence
Length: 238
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.928 | 0.489 | 1.07 | 1.014 | 0.84 | 0.862 | 0.75 | 1.261 | 1.681 | 0.908 | 0.573 | 0.989 | 1.867 | 0.808 | 1.458 | 1.501 | 0.895 | 1.082 | 0.646 | 0.618 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7900
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
39-60
|
0.957
|
24-84
|
0.968
|
— | — |
0.000
|
— | — |
0.656
|
0.210
|
0.008
|
0.463
|
0.093
|
0.091
|
0.064
|
0.015
|
0.025
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008920
|
1.000
|
1.000
|
Hsc_gene_849.t1
|
Hsc_gene_849.t1
|
— |
P46948.1 Exosome complex component SKI6 [Saccharomyces cerevisiae S288C]
|
KAF7633110.1 RNase_PH domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.787|GO:0005575_0.777|GO:0110165_0.772|GO:0016020_0.690|GO:0005622_0.677|GO:0005737_0.656|GO:0043226_0.627|GO:0043229_0.618|GO:0043227_0.602|GO:0043231_0.591|GO:0008152_0.557|GO:0044238_0.537|GO:0043170_0.506
|
IPR001247+2-138+|IPR020568+4-138+|IPR027408+1-233+|IPR036345+140-227+|IPR050080+3-226+
|
— |
PF01138+2-138+3'_exoribonuclease_family,_domain_1
|
— |
PTHR11953+3-226+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-238
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
26397.120
|
7.307
|
3.000
|
24.370
|
12.185
|
45.798
|
54.202
|
13.445
|
10.924
|
52.521
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
saddlebrown
|
439.222
|
252.761
|
291.519
|
413.647
|
477.985
|
376.979
|
376.243
|
314.237
|
535.766
|
581.009
|
561.619
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.573
|
0.613
|
0.176
|
-0.328
|
— |
-0.369
|
0.401
|
— | — | — | — | — |
No JSON data available for plots.