Hg_chrom4_TN10mRNA_8406
Organism: Heterodera glycines Gene Locus: chr4:7618977-7620602 Feature type: polypeptideProtein Sequence
Length: 323
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.152 | 0.792 | 0.957 | 0.427 | 1.6 | 0.794 | 0.59 | 0.774 | 1.858 | 1.297 | 1.501 | 1.457 | 1.29 | 0.417 | 0.758 | 0.885 | 0.711 | 1.032 | 0.714 | 0.546 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7901
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.489
|
0.299
|
0.112
|
0.777
|
0.122
|
0.073
|
0.175
|
0.319
|
0.079
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008921
|
1.000
|
1.000
|
Hsc_gene_848.t1
|
Hsc_gene_848.t1
|
— |
Q9EQS0.2 Transaldolase [Rattus norvegicus]
|
KAH7720138.1 Protein Y24D9A.8 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004801|GO:0005737|GO:0005975|GO:0006098
|
GO:0003674_0.793|GO:0005575_0.742|GO:0110165_0.734|GO:0008150_0.732|GO:0005622_0.694|GO:0003824_0.692|GO:0009987_0.671|GO:0016740_0.622|GO:0004801_0.583|GO:0005737_0.583|GO:0016744_0.583|GO:0016020_0.553|GO:0008152_0.534|GO:0044238_0.510|GO:0044237_0.509
|
IPR001585+4-320_15-318+|IPR004730+4-319_5-322+|IPR013785+1-323+|IPR018225+32-40_132-149+
|
— |
PF00923+15-318+Transaldolase/Fructose-6-phosphate_aldolase
|
G3DSA:3.20.20.70:FF:000088+2-323+Transaldolase
|
PTHR10683+4-320+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-323
|
1f05_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
36150.880
|
6.082
|
-1.500
|
30.031
|
8.978
|
47.059
|
52.941
|
15.170
|
14.861
|
44.272
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
purple
|
3618.917
|
2489.830
|
1432.253
|
4631.354
|
10593.515
|
6654.118
|
3167.253
|
1861.937
|
1704.509
|
2993.032
|
2440.808
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.028
|
0.758
|
1.802
|
1.162
|
-0.656
|
-1.060
|
-1.940
|
0.908
|
— |
1.607
|
— | — | — |
No JSON data available for plots.