SCN Proteipedia

Hg_chrom4_TN10mRNA_8407

Organism: Heterodera glycines Gene Locus: chr4:7621578-7623841 Feature type: polypeptide

Protein Sequence

Length: 303

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.844	0.844	1.32	0.569	1.43	1.015	0.314	1.485	1.247	1.383	0.85	3.494	1.192	0.635	1.751	0.943	0.595	0.75	1.015	0.582	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7902	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRMSFCNWTGRRTAK	—	—	—	—	—	—	0.000	—	—	0.736	0.288	0.035	0.331	0.055	0.137	0.077	0.016	0.064	0.036

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008922	1.000	1.000	Hsc_gene_847.t1	Hsc_gene_847.t1	—	—	KAI1724426.1 transcription initiation factor IID, 18kD subunit domain-containing protein [Ditylenchus destructor]	KAI0995026	0.190

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006366	GO:0008150_0.936\|GO:0005575_0.890\|GO:0110165_0.889\|GO:0009987_0.875\|GO:0005622_0.841\|GO:0065007_0.814\|GO:0050789_0.802\|GO:0016020_0.801\|GO:0008152_0.797\|GO:0050794_0.784\|GO:0044238_0.779\|GO:0043226_0.773\|GO:0044237_0.772\|GO:0005737_0.767\|GO:0043170_0.762\|GO:0009058_0.759\|GO:0071840_0.759\|GO:0043229_0.753\|GO:0044249_0.748\|GO:0016043_0.745\|GO:0009059_0.738\|GO:0006139_0.727\|GO:0010467_0.726\|GO:0019222_0.722\|GO:0043227_0.718\|GO:0031323_0.716\|GO:0090304_0.712\|GO:0034654_0.711\|GO:0043231_0.711\|GO:0060255_0.711\|GO:0080090_0.708\|GO:0141187_0.706\|GO:0016070_0.705\|GO:0009889_0.702\|GO:0010468_0.702\|GO:0010556_0.702\|GO:0031326_0.702\|GO:0032774_0.701\|GO:0019219_0.689\|GO:0051252_0.686\|GO:0006351_0.684\|GO:2001141_0.683\|GO:0006355_0.682\|GO:0006325_0.678\|GO:0006366_0.678\|GO:0006357_0.676\|GO:0032991_0.669\|GO:0043228_0.643\|GO:0043232_0.643\|GO:0005634_0.636\|GO:0005829_0.636\|GO:1902494_0.577\|GO:0140513_0.562\|GO:0140535_0.559\|GO:1990234_0.551\|GO:0005694_0.550\|GO:0000785_0.546\|GO:1905368_0.546\|GO:0000123_0.540\|GO:0000124_0.540\|GO:0031248_0.540\|GO:0070461_0.540\|GO:0071819_0.540\|GO:1902493_0.540	IPR003195+29-106_29-262+	—	PF02269+29-106+Transcription_initiation_factor_IID,_18kD_subunit	—	PTHR11380+29-262+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-303	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.642	35451.820	6.417	-0.500	33.003	10.561	50.825	49.175	17.162	15.842	40.924

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	brown	334.965	388.258	409.966	381.089	517.494	416.846	563.893	323.891	66.384	290.146	194.248

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.151	-0.164	—	0.410	-0.298	0.447	-0.465	0.941	—	—	—	—	—

No JSON data available for plots.

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