SCN Proteipedia

Hg_chrom4_TN10mRNA_8408

Organism: Heterodera glycines Gene Locus: chr4:7623938-7629854 Feature type: polypeptide

Protein Sequence

Length: 1,284 (Signal peptide: 1-35)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.824	1.413	0.736	2.363	0.818	1.238	0.89	1.674	0.502	0.958	0.507	0.779	1.147	1.737	1.287	1.157	0.996	0.614	0.779	0.779	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7903	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Not_Clustered	0.694

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide	extracellular	chloroplast	KKKINFCPHGEPKWERK,KRQCEEQCDQQKKPQKKKI	—	—	20-43	0.990	1-35	—	0.786	—	0.000	0.143	0.086	0.015	0.294	0.055	0.167	0.152	0.055	0.186	0.846

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008923	1.000	1.000	Hsc_gene_846.t1	Hsc_gene_846.t1	—	O76840.1 Papilin [Caenorhabditis elegans]	CDJ91544.1 Proteinase inhibitor I2 domain containing protein [Haemonchus contortus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004867	GO:0008150_0.774\|GO:0005575_0.736\|GO:0110165_0.730\|GO:0003674_0.645\|GO:0009987_0.562\|GO:0005488_0.511	IPR002223+323-376_324-376_325-375_437-490_438-490_439-489_539-596_541-595_541-596_652-705_653-704_654-704_799-852_801-851_801-852_935-988_937-987_1107-1160_1109-1159_1223-1237_1224-1277_1225-1276_1226-1276_1251-1261_1261-1276+\|IPR006150+270-317_386-430_604-648_749-795_879-927_1054-1100_1171-1220+\|IPR020901+1254-1272+\|IPR028150+271-317_387-429_605-648_750-795_905-927_1055-1100_1173-1219+\|IPR036880+317-376_320-377_432-493_434-491_530-596_536-598_643-706_648-708_791-852_798-856_932-991_934-988_1103-1160_1104-1160_1216-1277_1223-1276+\|IPR053014+196-317+	SM00131+323-376_437-490_539-596_652-705_799-852_935-988_1107-1160_1224-1277+\|SM00289+270-317_386-430_604-648_749-795_879-927_1054-1100_1171-1220+	PF00014+324-376_438-490_541-596_653-704_801-852_937-987_1109-1159_1225-1276+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain\|PF14625+271-317_387-429_605-648_750-795_905-927_1055-1100_1173-1219+Lustrin,_cysteine-rich_repeated_domain	—	PTHR46339+196-317+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	167-267;713-760;983-1042	4.000	1-166;268-712;761-982;1043-1284	6nan_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.925	141003.490	7.658	30.500	21.963	11.137	47.040	52.960	13.006	8.956	58.801

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	orange	turquoise	473.837	346.124	377.904	260.069	340.762	560.941	388.497	399.807	19.086	1055.935	611.571

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.549	-0.431	0.357	0.735	-0.520	-0.595	—	-5.939	3.961	—	—	—

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