Hg_chrom4_TN10mRNA_8413
Organism: Heterodera glycines Gene Locus: chr4:7646082-7647799 Feature type: polypeptideProtein Sequence
Length: 268
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.911 | 1.128 | 1.425 | 0.257 | 1.244 | 0.478 | 1.111 | 2.239 | 0.498 | 1.059 | 0.622 | 1.097 | 1.14 | 1.005 | 1.599 | 0.8 | 0.734 | 1.074 | 1.722 | 0.878 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7907
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.712
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
cytoplasm|mitochondrion
|
— |
RREDKLEHFWKKGKT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.217
|
0.742
|
0.055
|
0.508
|
0.022
|
0.106
|
0.105
|
0.207
|
0.076
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008926
|
1.000
|
1.000
|
Hsc_gene_842.t1
|
Hsc_gene_842.t1;Hsc_gene_913.t1;Hsc_gene_913.t2
|
— |
Q09297.2 Putative nudix hydrolase 6 [Caenorhabditis elegans]
|
KIH61819.1 hydrolase, NUDIX family [Ancylostoma duodenale]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0047631
|
GO:0008150_0.928|GO:0005575_0.834|GO:0110165_0.833|GO:0003674_0.806|GO:0009987_0.718|GO:0005622_0.707|GO:0016020_0.669|GO:0005737_0.543|GO:0003824_0.532|GO:0065007_0.518|GO:0050789_0.507|GO:0050896_0.504
|
IPR000086+119-263_132-257+|IPR015797+14-253+|IPR039989+7-263+
|
— |
PF00293+132-257+NUDIX_domain
|
— |
PTHR13030+7-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-268
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
30117.450
|
6.080
|
-3.000
|
31.716
|
13.806
|
48.507
|
51.493
|
16.418
|
15.299
|
52.985
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
1097.027
|
786.370
|
671.567
|
590.121
|
677.005
|
638.666
|
889.463
|
900.498
|
444.680
|
2533.349
|
1638.205
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.458
|
-0.552
|
— |
0.166
|
— |
0.489
|
0.390
|
— |
-2.627
|
— | — | — | — |
No JSON data available for plots.