SCN Proteipedia

Hg_chrom4_TN10mRNA_8414

Organism: Heterodera glycines Gene Locus: chr4:7647898-7652585 Feature type: polypeptide

Protein Sequence

Length: 968

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.733	1.201	0.939	0.606	0.947	1.775	0.603	1.498	1.033	1.089	0.767	1.823	1.291	1.351	1.286	1.446	0.745	0.689	0.556	0.638	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7908	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	0.979

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRQKLLEDYKKKKVE,KRRAILASQIRRKERI,RRMEREQRRQKLLEDYKKK	—	—	—	—	—	—	0.000	—	—	0.284	0.118	0.026	0.695	0.084	0.122	0.153	0.027	0.362	0.074

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008927	1.000	1.000	Hsc_gene_841.t1	Hsc_gene_841.t1	—	U4PAZ9.1 Patronin (microtubule-binding protein) homolog [Caenorhabditis elegans]	KAI1724438.1 microtubule-binding calmodulin-regulated spectrin-associated domain-containing protein [Ditylenchus destructor]	No	-0.280

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005516\|GO:0008017	GO:0008150_0.970\|GO:0009987_0.938\|GO:0005575_0.836\|GO:0110165_0.833\|GO:0016043_0.809\|GO:0071840_0.809\|GO:0003674_0.801\|GO:0005622_0.783\|GO:0005488_0.779\|GO:0032502_0.765\|GO:0005515_0.738\|GO:0043226_0.712\|GO:0048856_0.707\|GO:0043229_0.694\|GO:0065007_0.684\|GO:0050789_0.674\|GO:0032501_0.667\|GO:0050794_0.667\|GO:0007275_0.634\|GO:0006996_0.599\|GO:0008092_0.594\|GO:0043228_0.538\|GO:0043232_0.537\|GO:0030154_0.535\|GO:0048869_0.535\|GO:0008017_0.526\|GO:0015631_0.526\|GO:0051011_0.521\|GO:0007010_0.502	IPR001715+187-316+\|IPR011033+834-967+\|IPR014797+833-962_834-968_836-953+\|IPR022613+217-295+\|IPR032940+13-319+\|IPR036872+192-318_210-309+\|IPR038209+843-961+	SM01051+833-962+	PF08683+836-953+Microtubule-binding_calmodulin-regulated_spectrin-associated\|PF11971+217-295+CAMSAP_CH_domain	—	PTHR21595+13-319+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-32;371-840	2.000	33-370;841-968	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.860	108989.090	8.078	19.500	25.207	10.537	51.963	48.037	14.360	10.847	49.690

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	lightyellow	2202.984	1553.920	1242.353	1482.522	2034.715	1863.020	3378.425	1703.480	941.224	3960.225	2666.367

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.552	-0.205	0.363	0.425	—	0.870	-0.234	1.131	-2.188	—	—	—	—

No JSON data available for plots.

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