Hg_chrom4_TN10mRNA_8415
Organism: Heterodera glycines Gene Locus: chr4:7655107-7660474 Feature type: polypeptideProtein Sequence
Length: 731
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 0.859 | 1.045 | 0.755 | 0.844 | 0.842 | 0.912 | 0.958 | 1.125 | 1.202 | 0.767 | 1.448 | 1.71 | 1.131 | 1.452 | 0.977 | 0.852 | 0.974 | 0.947 | 1.046 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7909
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
PLYKRKP
|
1-40
|
0.966
|
12-44
|
0.965
|
— | — |
0.000
|
— | — |
0.083
|
0.188
|
0.024
|
0.291
|
0.305
|
0.189
|
0.286
|
0.011
|
0.335
|
0.476
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003896
|
2.000
|
1.000
|
Hsc_gene_840.t1
|
Hsc_gene_839.t1;Hsc_gene_840.t1
|
— |
Q559Z0.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Dictyostelium discoideum]
|
KAF7633368.1 NAD(P)-bd_dom domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0005575_0.882|GO:0110165_0.882|GO:0016020_0.809|GO:0005622_0.598|GO:0005737_0.579|GO:0043226_0.553|GO:0008150_0.546|GO:0043229_0.540|GO:0043227_0.525|GO:0043231_0.511
|
IPR001254+424-682+|IPR001509+19-227+|IPR009003+410-671+|IPR036291+18-246+|IPR043504+441-511+|IPR051207+4-253+
|
SM00020+424-682+
|
PF01370+19-227+NAD_dependent_epimerase/dehydratase_family
|
— |
PTHR12126+4-253+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-731
|
8esz_A9
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
82302.350
|
8.535
|
17.000
|
24.897
|
12.859
|
43.912
|
56.088
|
14.090
|
10.807
|
50.205
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
2844.595
|
2301.410
|
2118.912
|
1906.555
|
2524.059
|
2794.974
|
6002.805
|
2846.764
|
1561.570
|
3588.119
|
2719.598
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.348
|
-0.409
|
— |
0.373
|
0.162
|
1.114
|
— |
1.220
|
-1.309
|
— | — | — | — |
No JSON data available for plots.