Hg_chrom4_TN10mRNA_8420
Organism: Heterodera glycines Gene Locus: chr4:7670830-7674255 Feature type: polypeptideProtein Sequence
Length: 788
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.871 | 1.741 | 0.646 | 0.525 | 1.058 | 1.725 | 0.982 | 1.713 | 0.761 | 1.355 | 0.731 | 0.97 | 0.846 | 0.83 | 0.958 | 1.595 | 1.019 | 0.75 | 0.195 | 0.187 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7912
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKQEEQKRKLESAKRKSQ
|
— | — |
2-27
|
0.981
|
— | — |
0.000
|
— | — |
0.873
|
0.154
|
0.004
|
0.313
|
0.039
|
0.033
|
0.026
|
0.040
|
0.040
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003897
|
1.000
|
2.000
|
Hsc_gene_836.t1;Hsc_gene_836.t2
|
Hsc_gene_836.t1;Hsc_gene_836.t2
|
— |
Q18171.1 Transcription regulator spe-44 [Caenorhabditis elegans]
|
KAF7633359.1 SAND domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0008150_0.960|GO:0005575_0.934|GO:0110165_0.930|GO:0005622_0.882|GO:0043226_0.844|GO:0009987_0.840|GO:0043229_0.834|GO:0003674_0.775|GO:0005488_0.768|GO:0016020_0.758|GO:0008152_0.734|GO:0043170_0.734|GO:0009058_0.718|GO:0009059_0.718|GO:0010467_0.718|GO:0044237_0.718|GO:0044249_0.718|GO:0044238_0.706|GO:0065007_0.706|GO:0006139_0.699|GO:0050789_0.697|GO:0090304_0.691|GO:0016070_0.690|GO:0034654_0.689|GO:0141187_0.687|GO:0043227_0.686|GO:0050794_0.681|GO:0032774_0.678|GO:0097159_0.675|GO:0006351_0.664|GO:0003676_0.663|GO:0043231_0.663|GO:0006366_0.644|GO:0003677_0.626|GO:0043565_0.622|GO:0003690_0.619|GO:1990837_0.619|GO:0005634_0.609|GO:0019222_0.596|GO:0048518_0.596|GO:0031323_0.595|GO:0060255_0.590|GO:0048522_0.589|GO:0043228_0.588|GO:0080090_0.587|GO:0043232_0.581|GO:0009889_0.572|GO:0031326_0.572|GO:0010556_0.571|GO:0010468_0.569|GO:0009893_0.555|GO:0019219_0.548|GO:0010604_0.546|GO:0031325_0.541|GO:0051252_0.540|GO:0009891_0.537|GO:2001141_0.535|GO:0031328_0.534|GO:0010557_0.532|GO:0006355_0.530|GO:0045935_0.518|GO:0051254_0.515|GO:0006357_0.514|GO:0045893_0.504|GO:1902680_0.504
|
IPR000770+155-237_162-234_164-237+|IPR010919+159-253_165-250+
|
SM00258+164-237+
|
PF01342+162-234+SAND_domain
|
— |
PTHR10417+121-284+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-168;270-379;437-494;545-597;752-788
|
4.000
|
169-269;380-436;495-544;598-751
|
1oqj_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.901
|
84917.490
|
7.261
|
10.500
|
22.843
|
7.360
|
54.442
|
45.558
|
12.944
|
9.898
|
54.949
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
716.757
|
665.547
|
191.021
|
569.660
|
878.420
|
708.328
|
1286.359
|
350.805
|
106.444
|
1312.177
|
795.434
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.029
|
-0.361
|
1.684
|
0.594
|
-0.296
|
0.872
|
-1.123
|
2.019
|
-3.742
|
— | — | — | — |
No JSON data available for plots.