Hg_chrom4_TN10mRNA_8422
Organism: Heterodera glycines Gene Locus: chr4:7689294-7696764 Feature type: polypeptideProtein Sequence
Length: 1,587
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.901 | 0.747 | 0.871 | 0.435 | 1.943 | 1.793 | 0.675 | 1.26 | 0.644 | 1.218 | 0.945 | 1.816 | 0.578 | 0.63 | 2.019 | 0.945 | 1.116 | 0.611 | 0.776 | 0.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7914
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRRGKS,RKQREISALKKELRR,RRSANLAAQLKHEKK,KKELRRSQLLCRDKER,RREKTIDELSHLGRRDRA,KKQLSEDHGEKREGRKKTA
|
— | — |
48-118
|
1.000
|
— | — |
0.000
|
— | — |
0.210
|
0.177
|
0.017
|
0.658
|
0.152
|
0.275
|
0.408
|
0.065
|
0.249
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001790
|
3.000
|
1.000
|
Hsc_gene_834.t1
|
Hsc_gene_834.t1
|
— | — |
KAH7728252.1 Protein T23F2.2 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-319;369-680;819-945;1009-1239;1407-1469;1580-1587
|
5.000
|
320-368;681-818;946-1008;1240-1406;1470-1579
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.549
|
181538.640
|
7.232
|
15.000
|
35.098
|
6.805
|
58.727
|
41.273
|
18.652
|
16.446
|
43.415
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
1596.738
|
1229.370
|
1756.651
|
531.884
|
283.248
|
685.989
|
446.752
|
1182.774
|
1059.881
|
3897.066
|
2681.130
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.283
|
-1.346
|
-1.613
|
-0.940
|
1.290
|
-0.607
|
0.679
|
-1.260
|
— | — |
-3.251
|
— | — |
No JSON data available for plots.