SCN Proteipedia

Hg_chrom4_TN10mRNA_8423

Organism: Heterodera glycines Gene Locus: chr4:7700368-7706221 Feature type: polypeptide

Protein Sequence

Length: 844

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.744	1.212	1.12	0.286	1.126	1.397	0.635	1.007	1.474	1.265	0.969	2.021	1.086	1.322	1.378	0.745	0.738	0.898	0.456	0.662	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7915	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.609

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.298	0.265	0.012	0.685	0.227	0.336	0.177	0.107	0.296	0.100

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002122	2.000	2.000	Hsc_gene_833.t1;Hsc_gene_833.t2	Hsc_gene_833.t1;Hsc_gene_833.t2	—	P39055.3 Dynamin [Caenorhabditis elegans]	KAI1716333.1 dynamin central region domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005525	GO:0005575_0.936\|GO:0110165_0.933\|GO:0016020_0.856\|GO:0005622_0.853\|GO:0008150_0.851\|GO:0043226_0.829\|GO:0009987_0.804\|GO:0043229_0.738\|GO:0005737_0.737\|GO:0003674_0.704\|GO:0071840_0.681\|GO:0016043_0.677\|GO:0043227_0.646\|GO:0051179_0.629\|GO:0006996_0.611\|GO:0051234_0.606\|GO:0071944_0.600\|GO:0043231_0.596\|GO:0006810_0.590\|GO:0005886_0.580\|GO:0005488_0.574\|GO:0065007_0.536\|GO:0061024_0.535\|GO:0005515_0.521\|GO:0050789_0.506	IPR000375+217-503+\|IPR001401+8-247_31-296+\|IPR001849+518-623_519-619_519-625+\|IPR003130+648-740_650-740+\|IPR011993+518-623+\|IPR019762+59-68+\|IPR020850+653-745+\|IPR022812+9-740_33-51_58-75_128-145_178-196_197-213_220-239+\|IPR027417+5-305_8-306+\|IPR030381+30-296+\|IPR045063+36-209+	SM00053+8-247+\|SM00233+519-625+\|SM00302+648-740+	PF00169+519-619+PH_domain\|PF00350+36-209+Dynamin_family\|PF01031+217-503+Dynamin_central_region\|PF02212+650-740+Dynamin_GTPase_effector_domain	G3DSA:1.20.120.1240:FF:000008+320-521+dynamin-3_isoform_X1\|G3DSA:3.40.50.300:FF:000045+8-306+dynamin-1_isoform_X2	PTHR11566+9-740+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	740-844	1.000	1-739	6s9a_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.723	95792.010	7.971	10.500	28.081	8.768	48.460	51.540	15.166	12.915	46.445

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	orange	2480.531	2594.706	4401.009	2482.486	1985.467	2422.863	5645.078	2893.640	1668.245	1191.671	1395.917

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.533	-0.201	-0.718	-0.354	0.302	1.231	—	1.106	—	—	—	—	—

No JSON data available for plots.

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