Hg_chrom4_TN10mRNA_8425
Organism: Heterodera glycines Gene Locus: chr4:7706897-7709697 Feature type: polypeptideProtein Sequence
Length: 666
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 1.117 | 0.683 | 0.88 | 1.001 | 1.271 | 0.697 | 1.727 | 0.834 | 2.151 | 0.41 | 0.353 | 1.21 | 0.953 | 1.685 | 1.18 | 0.788 | 0.728 | 1.733 | 0.309 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7916
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
chloroplast
|
— | — | — |
49-72
|
0.967
|
1-21
|
0.961
|
0.966
|
1.000
|
1.000
|
0.172
|
0.058
|
0.030
|
0.240
|
0.483
|
0.636
|
0.485
|
0.048
|
0.687
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002123
|
1.000
|
3.000
|
Hsc_gene_832.t1;Hsc_gene_832.t2;Hsc_gene_832.t3
|
Hsc_gene_832.t1;Hsc_gene_832.t2
|
— | — |
CAK5082964.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR001611+424-445+|IPR003591+93-116_328-350_352-374_422-445_488-511+|IPR032675+65-263_264-458_459-607+|IPR050328+397-574+
|
SM00364+327-346_401-420_422-441_466-485+|SM00369+93-116_328-350_352-374_422-445_488-511+
|
— | — |
PTHR24373+397-574+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-666
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.810
|
75193.150
|
8.369
|
19.500
|
24.174
|
11.111
|
46.997
|
53.003
|
14.414
|
9.760
|
46.697
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
73.550
|
150.565
|
254.755
|
97.884
|
31.657
|
25.869
|
31.345
|
126.757
|
7.934
|
46.270
|
29.840
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.530
|
-0.759
|
-1.272
|
-1.656
|
— | — |
2.190
|
-1.874
|
— | — | — | — | — |