SCN Proteipedia

Hg_chrom4_TN10mRNA_8427

Organism: Heterodera glycines Gene Locus: chr4:7710519-7712433 Feature type: polypeptide

Protein Sequence

Length: 372

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.125	1.375	0.489	0.649	1.12	1.723	0.736	1.21	0.478	1.126	0.896	1.423	1.195	1.758	1.756	1.19	0.485	0.652	0.414	0.237	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7917	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	17-Not_Clustered	0.599

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RKRLSFPQAICNNALRKKL,KRLSFPQAICNNALRKKLM,RKKLMGNGAGERAREQRKK,KKLMGNGAGERAREQRKKG	—	—	—	—	—	—	0.000	—	—	0.385	0.228	0.028	0.641	0.092	0.117	0.110	0.015	0.431	0.075

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003898	2.000	1.000	Hsc_gene_831.t1	Hsc_gene_831.t1;Hsc_gene_831.t2	—	—	KAF7633376.1 SH2 domain-containing protein, partial [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.948\|GO:0065007_0.921\|GO:0009987_0.917\|GO:0050789_0.912\|GO:0050794_0.901\|GO:0003674_0.845\|GO:0005488_0.845\|GO:0050896_0.815\|GO:0051716_0.796\|GO:0005515_0.787\|GO:0007154_0.773\|GO:0023052_0.772\|GO:0007165_0.751\|GO:0005575_0.678\|GO:0110165_0.674\|GO:0016020_0.628\|GO:0005622_0.626\|GO:0043226_0.607\|GO:0043229_0.585\|GO:0043227_0.551\|GO:0043231_0.534\|GO:0005737_0.488\|GO:0032501_0.486\|GO:0048518_0.478\|GO:0032502_0.470\|GO:0048856_0.470\|GO:0048522_0.467\|GO:0071840_0.449\|GO:0007275_0.448\|GO:0016043_0.446\|GO:0048519_0.437\|GO:0005634_0.435\|GO:0048731_0.433\|GO:0048523_0.429\|GO:0030154_0.425\|GO:0048869_0.425\|GO:0043228_0.418\|GO:0043232_0.418\|GO:0048468_0.410\|GO:0048583_0.395\|GO:0051239_0.387\|GO:0050793_0.382\|GO:0009653_0.380\|GO:0006996_0.379\|GO:0007166_0.372\|GO:0008283_0.370\|GO:0002376_0.364\|GO:0045595_0.363\|GO:0022414_0.362\|GO:0048584_0.362\|GO:2000026_0.361\|GO:0031974_0.358\|GO:0031981_0.358\|GO:0043233_0.358\|GO:0070013_0.358\|GO:0003006_0.357\|GO:0051094_0.357\|GO:0051240_0.357\|GO:0060284_0.357\|GO:0007155_0.355\|GO:0030097_0.354\|GO:0045597_0.354\|GO:0035295_0.353\|GO:0019953_0.352\|GO:0051093_0.352	IPR000980+269-363_271-341_271-347+\|IPR036860+270-361_271-352+	SM00252+271-347+	PF00017+271-341+SH2_domain	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-261	1.000	262-372	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.914	41265.840	10.591	23.500	26.344	8.065	50.269	49.731	16.935	9.409	51.075

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	270.153	313.418	437.723	540.332	267.699	184.173	272.406	327.716	45.870	268.717	173.211

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.253	0.649	0.413	-1.047	-0.524	0.575	0.727	—	—	3.683	—	—	—

No JSON data available for plots.

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