Hg_chrom4_TN10mRNA_8428
Organism: Heterodera glycines Gene Locus: chr4:7716665-7718276 Feature type: polypeptideProtein Sequence
Length: 219
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.221 | 0.743 | 0.664 | 0.945 | 0.837 | 0.585 | 0.598 | 1.826 | 1.218 | 1.111 | 0.761 | 1.343 | 1.649 | 1.142 | 1.491 | 1.37 | 0.749 | 0.83 | 0.702 | 0.94 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7918
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.817
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
12-32
|
0.999
|
1-41
|
0.990
|
— | — |
0.000
|
— | — |
0.549
|
0.286
|
0.022
|
0.754
|
0.091
|
0.281
|
0.180
|
0.004
|
0.114
|
0.185
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008929
|
1.000
|
1.000
|
Hsc_gene_830.t1
|
Hsc_gene_830.t1
|
— |
Q17QM8.1 Dual specificity protein phosphatase 14 [Bos taurus]
|
OZC04941.1 dual specificity phosphatase, catalytic domain protein [Onchocerca flexuosa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006470|GO:0016311
|
GO:0003674_0.805|GO:0008150_0.755|GO:0005575_0.702|GO:0110165_0.687|GO:0003824_0.673|GO:0009987_0.658|GO:0005622_0.609|GO:0016787_0.595|GO:0016788_0.574|GO:0016791_0.560|GO:0042578_0.560|GO:0140096_0.527|GO:0008152_0.525|GO:0004721_0.510
|
IPR000340+52-180+|IPR000387+105-163+|IPR020422+44-181_44-184+|IPR029021+43-209_44-182+|IPR052103+39-212+
|
SM00195+44-181+
|
PF00782+52-180+Dual_specificity_phosphatase,_catalytic_domain
|
— |
PTHR45961+39-212+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
207-219
|
1.000
|
1-206
|
2e0t_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
24456.140
|
9.421
|
12.000
|
24.658
|
13.699
|
44.292
|
55.708
|
15.982
|
8.676
|
50.685
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
325.436
|
177.285
|
427.744
|
163.299
|
43.807
|
95.898
|
84.790
|
1498.443
|
52.447
|
450.223
|
279.748
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.042
|
— |
-1.279
|
-1.929
|
1.143
|
— |
3.872
|
-4.004
|
— | — | — | — | — |
No JSON data available for plots.