SCN Proteipedia

Hg_chrom4_TN10mRNA_8430

Organism: Heterodera glycines Gene Locus: chr4:7725491-7730493 Feature type: polypeptide

Protein Sequence

Length: 616

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.019	0.717	0.945	0.672	1.001	1.207	0.715	2.516	0.758	1.492	0.32	1.719	0.812	1.342	1.524	1.368	0.665	0.984	0.624	0.43	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7920	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.747

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	46-72	0.994	—	—	0.000	—	—	0.351	0.172	0.021	0.588	0.349	0.340	0.295	0.027	0.321	0.045

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008931	1.000	1.000	Hsc_gene_828.t1	Hsc_gene_828.t1	—	Q2LL38.2 5'-AMP-activated protein kinase subunit gamma-3 [Bos taurus]	KAI1724451.1 5'-AMP-activated protein kinase subunit gamma-2 [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.913\|GO:0110165_0.903\|GO:0003674_0.873\|GO:0005622_0.826\|GO:0016020_0.752\|GO:0008150_0.747\|GO:0005737_0.724\|GO:0005488_0.711\|GO:0009987_0.707\|GO:0065007_0.694\|GO:0043226_0.682\|GO:0050789_0.680\|GO:0043229_0.672\|GO:0043227_0.648\|GO:0043231_0.626\|GO:0050896_0.611\|GO:0097159_0.597\|GO:0003824_0.596\|GO:0005829_0.592\|GO:0016740_0.580\|GO:0005515_0.565\|GO:0016772_0.556\|GO:0036094_0.554\|GO:0043167_0.554\|GO:0005634_0.552\|GO:0016301_0.552\|GO:0050794_0.548\|GO:0043168_0.539\|GO:0000166_0.536\|GO:1901265_0.536\|GO:1901363_0.536\|GO:0017076_0.535\|GO:0030554_0.535\|GO:0097367_0.535\|GO:0032553_0.534\|GO:0032555_0.534\|GO:0032559_0.534	IPR000644+316-365_464-524_468-517_469-518_545-604_548-598_550-598+\|IPR046342+281-450_296-440_457-607_469-599+\|IPR050511+293-514+	SM00116+316-365_469-518_548-598+	PF00571+468-517_550-598+CBS_domain	—	PTHR13780+293-514+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-248	1.000	249-616	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.706	67939.040	6.803	5.500	25.812	10.227	47.240	52.760	14.610	11.201	52.110

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	saddlebrown	2184.863	6215.763	4463.498	1472.741	1444.777	1780.079	3162.017	3008.272	1099.377	654.063	844.912

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.709	-2.215	-1.490	—	0.316	0.839	0.651	0.215	—	—	—	—	—

No JSON data available for plots.

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