Hg_chrom4_TN10mRNA_8434
Organism: Heterodera glycines Gene Locus: chr4:7738483-7740820 Feature type: polypeptideProtein Sequence
Length: 534
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.566 | 0.697 | 0.443 | 0.839 | 1.217 | 1.104 | 0.424 | 1.124 | 0.874 | 1.62 | 1.107 | 1.212 | 2.341 | 1.008 | 1.452 | 1.391 | 0.829 | 0.908 | 0.72 | 0.606 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7923
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.910
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RRKKNREKRTRKTKGI,KRKDGEENKRKCEKKFRF
|
1-21
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.386
|
0.068
|
0.039
|
0.266
|
0.282
|
0.128
|
0.161
|
0.049
|
0.266
|
0.299
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003899
|
2.000
|
1.000
|
Hsc_gene_825.t2
|
— | — | — | — |
WP_124068351
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
373-534
|
1.000
|
1-372
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
61734.820
|
10.058
|
31.000
|
26.404
|
13.670
|
48.502
|
51.498
|
16.667
|
9.738
|
42.322
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
184.673
|
143.057
|
675.121
|
245.570
|
98.254
|
112.434
|
51.359
|
424.433
|
83.000
|
89.359
|
86.634
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.007
|
0.642
|
-1.349
|
-1.353
|
— |
-1.116
|
1.810
|
-2.899
|
— | — | — | — | — |
No JSON data available for plots.