SCN Proteipedia

Hg_chrom4_TN10mRNA_8438

Organism: Heterodera glycines Gene Locus: chr4:7759422-7760427 Feature type: polypeptide

Protein Sequence

Length: 220

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.899	1.691	0.579	0.94	1.061	1.282	0.866	0.682	0.101	0.553	1.24	1.604	0.758	1.136	1.855	1.623	1.043	1.171	0.35	0.0	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7926	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PKPS	—	—	—	—	—	—	0.000	—	—	0.919	0.084	0.060	0.362	0.019	0.019	0.028	0.024	0.106	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008934	1.000	1.000	Hsc_gene_819.t1	Hsc_gene_819.t1;Hsc_gene_820.t1;Hsc_gene_822.t1	—	Q8CCI5.1 RING1 and YY1-binding protein [Mus musculus]	KAI1716294.1 zn-finger in ran binding protein and others domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0045893	GO:0005575_0.925\|GO:0110165_0.925\|GO:0005622_0.869\|GO:0043226_0.834\|GO:0016020_0.833\|GO:0043229_0.820\|GO:0043227_0.773\|GO:0008150_0.771\|GO:0043231_0.769\|GO:0065007_0.741\|GO:0005634_0.730\|GO:0050789_0.729\|GO:0009987_0.722\|GO:0050794_0.722\|GO:0003674_0.684\|GO:0005488_0.684\|GO:0008152_0.651\|GO:0009058_0.651\|GO:0009059_0.651\|GO:0010467_0.651\|GO:0043170_0.651\|GO:0044237_0.651\|GO:0044249_0.651\|GO:0019222_0.646\|GO:0031323_0.646\|GO:0044238_0.635\|GO:0080090_0.635\|GO:0006139_0.628\|GO:0060255_0.628\|GO:0009889_0.621\|GO:0010556_0.621\|GO:0016070_0.621\|GO:0031326_0.621\|GO:0032774_0.621\|GO:0034654_0.621\|GO:0090304_0.621\|GO:0141187_0.621\|GO:0005515_0.618\|GO:0010468_0.614\|GO:0048519_0.611\|GO:0019219_0.604\|GO:0006351_0.601\|GO:0051252_0.595\|GO:0048523_0.593\|GO:2001141_0.593\|GO:0006355_0.587\|GO:0009892_0.555\|GO:0010605_0.554\|GO:0031324_0.552\|GO:0009890_0.548\|GO:0031327_0.548\|GO:0010558_0.547\|GO:0045934_0.543\|GO:0051253_0.543\|GO:0045892_0.541\|GO:1902679_0.541\|GO:0140110_0.533\|GO:0060090_0.515\|GO:0030674_0.513\|GO:0003712_0.510\|GO:0003714_0.505	IPR039958+61-210+	—	—	—	PTHR12920+61-210+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-220	0.000	—	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.863	23976.880	10.856	18.500	28.182	4.545	58.182	41.818	18.636	9.545	59.545

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	lightcyan	1327.128	1106.717	1216.109	1376.611	1472.178	1226.784	1319.176	987.030	1167.389	1666.414	1452.546

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.178	0.288	—	-0.248	—	-0.418	0.560	—	—	—	—	—

No JSON data available for plots.

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