Hg_chrom4_TN10mRNA_8443
Organism: Heterodera glycines Gene Locus: chr4:7775225-7779275 Feature type: polypeptideProtein Sequence
Length: 604
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.751 | 1.386 | 1.114 | 0.571 | 1.269 | 0.807 | 0.512 | 0.662 | 1.251 | 1.298 | 0.978 | 1.656 | 1.656 | 0.478 | 1.183 | 1.301 | 0.706 | 0.878 | 0.891 | 1.266 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7930
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-21
|
0.979
|
1.000
|
0.000
|
0.000
|
0.294
|
0.253
|
0.061
|
0.483
|
0.151
|
0.152
|
0.235
|
0.097
|
0.179
|
0.562
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008936
|
1.000
|
1.000
|
Hsc_gene_2021.t1
|
Hsc_gene_2021.t1
|
— | — |
KAI3419972.1 hypothetical protein GPALN_003309 [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-604
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.581
|
69436.910
|
5.634
|
-5.000
|
27.318
|
12.748
|
49.834
|
50.166
|
13.576
|
13.742
|
46.192
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1306.654
|
2006.033
|
3701.639
|
1348.905
|
1037.737
|
635.647
|
595.833
|
2174.989
|
678.029
|
895.296
|
802.182
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
-0.710
|
-1.349
|
-0.411
|
-0.692
|
— |
1.674
|
-1.730
|
— | — | — | — | — |