SCN Proteipedia

Hg_chrom4_TN10mRNA_8444

Organism: Heterodera glycines Gene Locus: chr4:7789638-7793613 Feature type: polypeptide

Protein Sequence

Length: 543

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	2.398	0.685	0.368	0.381	0.246	3.778	1.052	1.842	0.368	1.269	0.363	0.65	0.767	1.098	0.489	1.184	0.785	0.725	0.142	0.325	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7931	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.973

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	29-96	0.873	—	—	0.001	—	—	0.778	0.122	0.010	0.406	0.064	0.030	0.044	0.038	0.039	0.076

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008937	1.000	1.000	Hsc_gene_14550.t1	Hsc_gene_14550.t1;Hsc_gene_14560.t1;Hsc_gene_14560.t2	—	O16011.2 Protein muscleblind [Drosophila melanogaster]	XP_052564129.1 protein muscleblind isoform X5 [Culex pipiens pallens]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0046872	GO:0008150_0.956\|GO:0009987_0.911\|GO:0065007_0.822\|GO:0050789_0.814\|GO:0050794_0.798\|GO:0008152_0.705\|GO:0009058_0.699\|GO:0005575_0.698\|GO:0044237_0.698\|GO:0043170_0.695\|GO:0110165_0.695\|GO:0044238_0.687\|GO:0009059_0.685\|GO:0010467_0.685\|GO:0044249_0.685\|GO:0006139_0.674\|GO:0034654_0.669\|GO:0016070_0.668\|GO:0032774_0.668\|GO:0090304_0.668\|GO:0141187_0.668\|GO:0019222_0.640\|GO:0031323_0.640\|GO:0080090_0.637\|GO:0060255_0.631\|GO:0016020_0.626\|GO:0009889_0.618\|GO:0010468_0.618\|GO:0010556_0.618\|GO:0031326_0.618\|GO:0006396_0.597\|GO:0008380_0.597\|GO:0005622_0.593\|GO:0043226_0.559\|GO:0043229_0.529\|GO:0043484_0.529	IPR000571+96-123_96-124_130-157_130-158+\|IPR054429+131-171+	SM00356+96-123_130-157+	PF22628+131-171+ZAP-like_CCCH_zinc_finger	G3DSA:3.30.1370.210:FF:000005+83-176+Muscleblind,_isoform_M	PTHR12675+86-436+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	313-455	2.000	1-312;456-543	3d2n_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.858	55235.660	9.215	17.000	11.971	7.735	42.726	57.274	8.471	3.499	59.116

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	lightgreen	2394.546	9461.592	3755.829	1694.185	951.376	1948.294	1719.390	5485.263	401.881	793.753	625.808

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.562	-2.619	-1.040	-0.864	1.048	—	1.392	-1.533	—	—	—	—	—

No JSON data available for plots.

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