Hg_chrom4_TN10mRNA_8445
Organism: Heterodera glycines Gene Locus: chr4:7793796-7798459 Feature type: polypeptideProtein Sequence
Length: 476
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.977 | 0.733 | 0.611 | 0.58 | 0.98 | 1.023 | 0.625 | 1.05 | 0.794 | 1.476 | 0.509 | 0.618 | 1.867 | 1.495 | 1.458 | 2.041 | 0.551 | 0.764 | 1.131 | 0.433 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7932
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.911
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
60-80
|
0.995
|
69-95
|
0.960
|
— | — |
0.000
|
— | — |
0.151
|
0.061
|
0.040
|
0.265
|
0.281
|
0.253
|
0.294
|
0.117
|
0.442
|
0.211
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008938
|
1.000
|
1.000
|
Hsc_gene_14551.t1
|
Hsc_gene_14551.t1
|
— | — |
KAJ1369056.1 Epithelial discoidin domain-containing receptor 1 [Parelaphostrongylus tenuis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.948|GO:0009987_0.895|GO:0065007_0.845|GO:0050789_0.821|GO:0050794_0.801|GO:0050896_0.792|GO:0005575_0.786|GO:0110165_0.784|GO:0032502_0.746|GO:0048856_0.746|GO:0016020_0.733|GO:0051716_0.729|GO:0032501_0.678|GO:0071840_0.672|GO:0016043_0.670|GO:0003674_0.656|GO:0007275_0.622|GO:0071944_0.619|GO:0005886_0.610|GO:0007154_0.573|GO:0023052_0.564|GO:0048731_0.549|GO:0007165_0.548|GO:0051128_0.545|GO:0048518_0.522|GO:0048522_0.511|GO:0007166_0.509
|
IPR000421+93-254_94-254_114-251_138-170_237-254+|IPR008979+98-256+
|
SM00231+93-254+
|
PF00754+114-251+F5/8_type_C_domain
|
— |
PTHR24543+96-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21;447-476
|
1.000
|
22-446
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.936
|
52578.680
|
8.667
|
11.000
|
21.849
|
11.765
|
46.639
|
53.361
|
12.605
|
9.244
|
52.311
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1216.171
|
3049.525
|
1976.214
|
989.216
|
578.138
|
1115.933
|
433.738
|
2197.523
|
387.623
|
1152.422
|
824.651
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.856
|
-1.761
|
-0.889
|
-0.807
|
0.963
|
-1.364
|
0.879
|
-2.212
|
— | — | — | — | — |
No JSON data available for plots.