Hg_chrom4_TN10mRNA_8446
Organism: Heterodera glycines Gene Locus: chr4:7809402-7814259 Feature type: polypeptideProtein Sequence
Length: 689
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.688 | 1.62 | 0.528 | 0.2 | 1.016 | 0.93 | 0.916 | 1.161 | 0.548 | 0.922 | 0.616 | 1.281 | 0.887 | 1.591 | 0.977 | 1.887 | 0.976 | 0.484 | 0.447 | 0.171 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7933
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RQSKRRT
|
— | — |
35-55
|
0.999
|
— | — |
0.000
|
— | — |
0.893
|
0.238
|
0.009
|
0.254
|
0.032
|
0.035
|
0.039
|
0.032
|
0.048
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003902
|
2.000
|
1.000
|
Hsc_gene_14553.t1
|
Hsc_gene_14553.t1
|
— |
G5EGS7.1 Putative transcription factor sel-7 [Caenorhabditis elegans]
|
CDJ82954.1 Protein SEL-7 [Haemonchus contortus]
|
No
|
0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0008150_0.949|GO:0005575_0.937|GO:0110165_0.934|GO:0009987_0.903|GO:0065007_0.882|GO:0005622_0.873|GO:0050789_0.867|GO:0050794_0.866|GO:0016020_0.857|GO:0003674_0.854|GO:0005488_0.854|GO:0043226_0.827|GO:0043229_0.814|GO:0032502_0.802|GO:0048856_0.802|GO:0032501_0.789|GO:0005515_0.788|GO:0008152_0.787|GO:0019222_0.787|GO:0031323_0.787|GO:0044237_0.787|GO:0044238_0.786|GO:0080090_0.786|GO:0050896_0.780|GO:0009058_0.779|GO:0043170_0.779|GO:0009059_0.777|GO:0010467_0.777|GO:0044249_0.777|GO:0048518_0.777|GO:0060255_0.777|GO:0007275_0.775|GO:0006139_0.768|GO:0043227_0.766|GO:0097159_0.766|GO:0016070_0.765|GO:0032774_0.765|GO:0034654_0.765|GO:0048522_0.765|GO:0090304_0.765|GO:0141187_0.765|GO:0009889_0.763|GO:0010556_0.763|GO:0031326_0.763|GO:0010468_0.762|GO:0003676_0.759|GO:0051716_0.756|GO:0048519_0.755|GO:0019219_0.754|GO:0051252_0.750|GO:0030154_0.748|GO:0048869_0.748|GO:0006351_0.741|GO:0048523_0.741|GO:0006355_0.739|GO:2001141_0.739|GO:0048513_0.729|GO:0043231_0.728|GO:0006366_0.723|GO:0023052_0.723|GO:0007154_0.722|GO:0006357_0.719|GO:0009653_0.715|GO:0009892_0.715|GO:0031324_0.713|GO:0007165_0.709|GO:0010605_0.709|GO:0009888_0.707|GO:0050793_0.707|GO:0003677_0.706|GO:0010646_0.706|GO:0023051_0.706|GO:0048583_0.706|GO:0005634_0.704|GO:0009890_0.704|GO:0010558_0.704|GO:0031327_0.704|GO:0045934_0.704|GO:0051253_0.704|GO:0009966_0.701|GO:0045892_0.700|GO:1902679_0.700|GO:0043565_0.695|GO:0009790_0.694|GO:0045595_0.692|GO:0007166_0.691|GO:0010647_0.691|GO:0000122_0.689|GO:0048646_0.689|GO:0023056_0.687|GO:0048584_0.686|GO:0009967_0.685|GO:0009887_0.683|GO:0048729_0.682|GO:0007267_0.680|GO:0022603_0.680|GO:0048598_0.679|GO:0045165_0.677|GO:0001704_0.674|GO:0001705_0.674|GO:0001706_0.674|GO:0001707_0.674|GO:0007369_0.674|GO:0007398_0.674|GO:0007492_0.674|GO:0007498_0.674|GO:0042802_0.674|GO:0048332_0.674|GO:0001708_0.670|GO:0001710_0.670|GO:0007219_0.670|GO:0007501_0.670|GO:0008593_0.670|GO:0010453_0.670|GO:0040034_0.670|GO:0042659_0.670|GO:0042661_0.670|GO:0045168_0.670|GO:0045747_0.670|GO:0046331_0.670|GO:0048333_0.670|GO:0060795_0.670|GO:1905770_0.670|GO:2000027_0.670
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-430;545-689
|
1.000
|
431-544
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.966
|
71535.920
|
7.412
|
7.000
|
20.174
|
6.676
|
49.927
|
50.073
|
11.176
|
8.999
|
63.280
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
740.923
|
619.666
|
1069.708
|
817.511
|
1104.932
|
808.984
|
1755.376
|
530.165
|
146.003
|
617.159
|
415.235
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.557
|
0.263
|
-0.278
|
0.403
|
-0.435
|
1.128
|
-0.715
|
1.870
|
— | — | — | — | — |
No JSON data available for plots.