Hg_chrom4_TN10mRNA_8448
Organism: Heterodera glycines Gene Locus: chr4:7827143-7832677 Feature type: polypeptideProtein Sequence
Length: 460
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.834 | 0.506 | 0.909 | 0.675 | 2.572 | 1.394 | 0.466 | 1.087 | 0.821 | 1.704 | 0.56 | 1.407 | 0.966 | 0.543 | 2.795 | 0.59 | 0.285 | 0.593 | 1.505 | 0.767 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7935
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.774
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RRQYEETELEKRREL,KREQREKEERARERAK,KREQREKEERDRERAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.535
|
0.161
|
0.009
|
0.452
|
0.271
|
0.217
|
0.089
|
0.041
|
0.055
|
0.280
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003661
|
2.000
|
1.000
|
Hsc_gene_15506.t1
|
— | — | — |
KAI6173589.1 Glycosyl transferase, family 31-containing protein [Aphelenchoides besseyi];KAI6209346.1 Glycosyl transferase, family 31-containing protein [Aphelenchoides besseyi]
|
No
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
— |
IPR002659+375-446+
|
— |
PF01762+375-446+Galactosyltransferase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-460
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
55296.690
|
5.342
|
-9.000
|
40.000
|
10.217
|
53.478
|
46.522
|
19.565
|
20.435
|
32.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1888.530
|
1430.164
|
1258.108
|
1305.312
|
1247.668
|
1302.823
|
1130.187
|
1568.465
|
781.298
|
4210.323
|
2740.741
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.414
|
-0.269
|
0.162
|
— | — |
-0.195
|
— |
-0.330
|
-2.530
|
— | — | — | — |
No JSON data available for plots.