SCN Proteipedia

Hg_chrom4_TN10mRNA_8449

Organism: Heterodera glycines Gene Locus: chr4:7835195-7844574 Feature type: polypeptide

Protein Sequence

Length: 958

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.716	1.626	0.93	0.396	0.974	1.204	0.758	1.148	1.206	1.044	0.933	1.842	1.334	0.823	1.299	0.835	0.958	1.155	0.562	1.013	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7936	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	0.993

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RRYLCRDVFREFERRIKTK	—	—	—	—	—	—	0.000	—	—	0.547	0.125	0.022	0.549	0.181	0.245	0.092	0.002	0.180	0.090

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001114	3.000	2.000	Hsc_gene_14558.t1;Hsc_gene_24910.t1	Hsc_gene_14558.t1	—	Q21770.1 Argonaute protein wago-1 [Caenorhabditis elegans]	KAI1719139.1 piwi domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0005515	GO:0008150_0.891\|GO:0005575_0.800\|GO:0110165_0.800\|GO:0005622_0.743\|GO:0009987_0.741\|GO:0008152_0.691\|GO:0065007_0.681\|GO:0050789_0.671\|GO:0003674_0.665\|GO:0043226_0.648\|GO:0043170_0.645\|GO:0043229_0.645\|GO:0050794_0.631\|GO:0044237_0.619\|GO:0009058_0.611\|GO:0016020_0.610\|GO:0044249_0.591\|GO:0009059_0.572\|GO:0005488_0.565\|GO:0010467_0.560\|GO:0005737_0.556\|GO:0019222_0.553\|GO:0031323_0.551\|GO:0060255_0.546\|GO:0009889_0.535\|GO:0031326_0.535\|GO:0010556_0.532\|GO:0010468_0.529\|GO:0043227_0.523\|GO:0043231_0.508\|GO:0044238_0.503	IPR003100+289-402_291-425_317-416+\|IPR003165+567-920_570-920_572-919+\|IPR012337+556-917+\|IPR036085+286-441+\|IPR036397+644-943+	SM00949+291-425+\|SM00950+570-920+	PF02170+317-416+PAZ_domain\|PF02171+572-919+Piwi_domain	—	PTHR22891+46-925+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-8;660-710	2.000	9-659;711-958	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.818	108622.830	9.181	26.000	25.783	11.273	49.165	50.835	14.823	10.960	49.374

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	blue	1590.167	461.760	596.074	1539.412	2553.188	789.600	1582.246	508.771	253.394	3755.289	2254.477

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	1.600	1.480	0.698	-1.679	1.013	-0.737	1.778	-4.002	2.780	—	—	—

No JSON data available for plots.

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