Hg_chrom4_TN10mRNA_8453
Organism: Heterodera glycines Gene Locus: chr4:7857093-7859694 Feature type: polypeptideProtein Sequence
Length: 556
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.816 | 1.129 | 0.85 | 0.31 | 1.079 | 1.015 | 0.985 | 1.888 | 1.519 | 1.215 | 0.845 | 1.587 | 1.499 | 0.726 | 0.918 | 0.822 | 1.061 | 0.981 | 1.522 | 0.476 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7939
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.203
|
0.407
|
0.101
|
0.704
|
0.170
|
0.539
|
0.435
|
0.168
|
0.275
|
0.213
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003903
|
2.000
|
1.000
|
Hsc_gene_14580.t1
|
Hsc_gene_14580.t1
|
— |
Q3ZBD7.4 Glucose-6-phosphate isomerase [Bos taurus]
|
KAH7727789.1 Phosphoglucose isomerase (PGI) [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004347|GO:0006094|GO:0006096|GO:0097367|GO:1901135
|
GO:0005575_0.779|GO:0110165_0.770|GO:0008150_0.733|GO:0003674_0.694|GO:0005622_0.631|GO:0009987_0.616|GO:0003824_0.614|GO:0005737_0.607|GO:0008152_0.574|GO:0044237_0.529
|
IPR001672+9-550_21-553_50-530_56-546_154-173_265-283_342-363_471-489_489-503_503-516+|IPR018189+269-282_503-520+|IPR023096+513-553+|IPR035476+126-287+|IPR035482+335-523+|IPR046348+11-550+
|
— |
PF00342+56-546+Phosphoglucose_isomerase
|
G3DSA:3.40.50.10490:FF:000004+102-295+Glucose-6-phosphate_isomerase
|
PTHR11469+9-550+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-556
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.641
|
62121.010
|
6.875
|
4.500
|
25.000
|
12.770
|
46.043
|
53.957
|
13.849
|
11.151
|
48.201
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
3690.875
|
1734.425
|
2735.710
|
3660.289
|
5313.056
|
5847.803
|
4445.110
|
4342.661
|
4548.820
|
2206.319
|
3210.248
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.429
|
0.940
|
0.528
|
0.505
|
— |
-0.384
|
-0.534
|
— | — | — | — | — | — |
No JSON data available for plots.