Hg_chrom4_TN10mRNA_8454
Organism: Heterodera glycines Gene Locus: chr4:7861414-7864319 Feature type: polypeptideProtein Sequence
Length: 447
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.676 | 0.624 | 1.139 | 0.617 | 1.119 | 1.319 | 0.692 | 0.336 | 1.74 | 1.512 | 0.983 | 1.184 | 1.616 | 0.516 | 1.278 | 1.182 | 0.66 | 1.017 | 1.033 | 0.724 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7940
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide|peroxisomal_targeting_signal
|
mitochondrion
|
— | — |
13-35
|
0.960
|
— | — | — | — |
0.000
|
— | — |
0.352
|
0.807
|
0.096
|
0.400
|
0.520
|
0.160
|
0.155
|
0.663
|
0.112
|
0.096
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008941
|
1.000
|
1.000
|
Hsc_gene_14579.t1
|
Hsc_gene_14579.t1
|
— |
Q5BLE2.1 Mitoguardin 2 [Danio rerio]
|
KAI1716376.1 mitoguardin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008053
|
GO:0008150_0.940|GO:0009987_0.882|GO:0071840_0.754|GO:0016043_0.748|GO:0006996_0.709|GO:0005575_0.706|GO:0110165_0.698|GO:0048284_0.677|GO:0007005_0.675|GO:0008053_0.670|GO:0016020_0.632|GO:0003674_0.581|GO:0005622_0.534|GO:0005737_0.505
|
IPR019392+127-440+
|
— |
PF10265+127-440+Mitoguardin
|
— |
PTHR21508+145-445+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-447
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
50807.700
|
6.705
|
0.500
|
26.398
|
10.291
|
46.532
|
53.468
|
13.423
|
12.975
|
44.072
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
greenyellow
|
1418.195
|
943.986
|
1024.743
|
1621.370
|
1953.890
|
1504.121
|
1500.039
|
1121.535
|
1499.455
|
1453.880
|
1473.412
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.112
|
0.643
|
0.771
|
0.237
|
-0.363
|
— |
-0.529
|
0.563
|
— | — | — | — | — |
No JSON data available for plots.