Hg_chrom4_TN10mRNA_8455
Organism: Heterodera glycines Gene Locus: chr4:7864598-7865798 Feature type: polypeptideProtein Sequence
Length: 154
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 1.208 | 0.826 | 0.448 | 1.732 | 1.832 | 0.387 | 0.325 | 0.144 | 0.527 | 2.853 | 0.764 | 1.263 | 0.25 | 3.446 | 0.186 | 0.745 | 1.082 | 0.999 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7941
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRDKRNKFTGRDFRR,KRKRQQTEKNRGKRKRK.,RKGVVRKAKNKQRKKRKWEERKQTVETVKERRAEKKRENVEKRKRQQTEKNRGKRKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.888
|
0.390
|
0.028
|
0.090
|
0.036
|
0.013
|
0.023
|
0.001
|
0.054
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008942
|
1.000
|
1.000
|
Hsc_gene_14578.t1
|
Hsc_gene_14578.t1
|
— |
Q23525.1 Uncharacterized protein ZK546.14 [Caenorhabditis elegans]
|
EJW81535.1 surfeit locus protein 6 containing protein, partial [Wuchereria bancrofti]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.953|GO:0110165_0.952|GO:0005622_0.942|GO:0043226_0.930|GO:0043229_0.923|GO:0043228_0.911|GO:0043232_0.908|GO:0016020_0.888|GO:0003674_0.854|GO:0005488_0.854|GO:0043227_0.850|GO:0043231_0.836|GO:0003676_0.832|GO:0003723_0.832|GO:0005634_0.832|GO:0097159_0.832|GO:0005730_0.820|GO:0031974_0.820|GO:0031981_0.820|GO:0043233_0.820|GO:0070013_0.820|GO:0005654_0.643|GO:0008150_0.547|GO:0009987_0.545
|
IPR007019+8-154+|IPR029190+6-148+
|
— |
PF04935+6-148+Surfeit_locus_protein_6
|
— |
PTHR14369+8-154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-154
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
18881.810
|
11.677
|
32.500
|
51.299
|
6.494
|
69.481
|
30.519
|
36.364
|
14.935
|
34.416
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
3280.738
|
1464.508
|
3511.851
|
1388.363
|
1189.038
|
1141.900
|
1708.443
|
1678.880
|
9649.994
|
2584.615
|
5612.635
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.031
|
-0.214
|
-1.229
|
-0.256
|
— |
0.594
|
0.448
|
— |
1.794
|
-2.642
|
— | — | — |
No JSON data available for plots.