Hg_chrom4_TN10mRNA_8456
Organism: Heterodera glycines Gene Locus: chr4:7865951-7867622 Feature type: polypeptideProtein Sequence
Length: 299
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.817 | 1.089 | 0.791 | 0.577 | 1.728 | 1.972 | 0.717 | 1.672 | 1.041 | 0.768 | 1.824 | 2.361 | 1.115 | 0.45 | 1.433 | 0.526 | 0.877 | 0.405 | 1.029 | 0.59 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7942
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.617
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRIR
|
15-92
|
0.849
|
45-92
|
0.971
|
— | — |
0.000
|
— | — |
0.843
|
0.086
|
0.006
|
0.279
|
0.024
|
0.070
|
0.091
|
0.005
|
0.048
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003904
|
2.000
|
1.000
|
Hsc_gene_14577.t1
|
Hsc_gene_14577.t1
|
— |
O60870.2 DNA/RNA-binding protein KIN17 [Homo sapiens]
|
KAI1729397.1 domain of kin17 curved DNA-binding protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.920|GO:0110165_0.917|GO:0005622_0.893|GO:0043226_0.852|GO:0043229_0.834|GO:0016020_0.833|GO:0043227_0.774|GO:0043231_0.754|GO:0005634_0.706|GO:0008150_0.657|GO:0009987_0.614
|
IPR019447+52-175_52-176+|IPR036236+26-65+|IPR037321+1-298+|IPR038254+60-161+
|
SM01253+52-176+
|
PF10357+52-175+Domain_of_Kin17_curved_DNA-binding_protein
|
G3DSA:1.10.10.2030:FF:000001+61-161+DNA/RNA-binding_protein_KIN17,_putative
|
PTHR12805+1-298+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12;137-299
|
1.000
|
13-136
|
2v1n_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
34982.810
|
9.964
|
18.000
|
37.124
|
10.702
|
58.528
|
41.472
|
22.408
|
14.716
|
37.793
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
paleturquoise
|
923.249
|
863.444
|
878.491
|
688.519
|
778.301
|
732.170
|
771.135
|
980.841
|
1675.291
|
647.909
|
1088.216
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.206
|
-0.464
|
-0.242
|
0.145
|
— | — |
0.316
|
-0.204
|
— | — | — | — |
5.083
|
No JSON data available for plots.