Hg_chrom4_TN10mRNA_8457
Organism: Heterodera glycines Gene Locus: chr4:7868625-7869186 Feature type: polypeptideProtein Sequence
Length: 132
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.145 | 0.176 | 0.689 | 0.261 | 1.389 | 0.971 | 1.353 | 0.758 | 0.673 | 0.512 | 2.41 | 1.783 | 0.842 | 0.874 | 0.618 | 1.19 | 0.745 | 1.148 | 0.583 | 0.668 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7943
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.710
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.645
|
0.290
|
0.027
|
0.533
|
0.243
|
0.075
|
0.119
|
0.002
|
0.082
|
0.241
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003565
|
2.000
|
1.000
|
Hsc_gene_14576.t1
|
Hsc_gene_14576.t1
|
— |
B5KFL3.1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Taeniopygia guttata]
|
KAI6192100.1 Peptidyl-prolyl cis-trans isomerase [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003755|GO:0006364
|
GO:0005575_0.921|GO:0110165_0.911|GO:0005622_0.871|GO:0043226_0.844|GO:0016020_0.833|GO:0043229_0.830|GO:0008150_0.808|GO:0043227_0.787|GO:0043231_0.778|GO:0003674_0.753|GO:0005737_0.753|GO:0009987_0.744|GO:0005488_0.642|GO:0008152_0.614|GO:0044238_0.599|GO:0043170_0.585|GO:0071840_0.563|GO:0044237_0.529|GO:0009058_0.523|GO:0005634_0.520|GO:0044249_0.503|GO:0009059_0.501
|
IPR000297+36-130+|IPR043323+1-132+|IPR046357+34-132+
|
— |
PF13616+33-131+PPIC-type_PPIASE_domain
|
G3DSA:3.10.50.40:FF:000015+34-132+Peptidyl-prolyl_cis-trans_isomerase
|
PTHR45995+1-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-46
|
1.000
|
47-132
|
1fjd_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
14188.290
|
10.310
|
10.000
|
32.576
|
7.576
|
50.000
|
50.000
|
20.455
|
12.121
|
51.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey60
|
129.008
|
119.507
|
208.938
|
131.517
|
131.648
|
110.812
|
126.615
|
122.882
|
163.100
|
85.118
|
118.538
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.577
|
— |
-0.559
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.