Hg_chrom4_TN10mRNA_8458
Organism: Heterodera glycines Gene Locus: chr4:7869818-7870999 Feature type: polypeptideProtein Sequence
Length: 141
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.072 | 0.825 | 1.289 | 0.245 | 1.537 | 0.727 | 0.76 | 1.064 | 0.788 | 1.15 | 0.967 | 2.086 | 0.985 | 0.682 | 0.434 | 1.013 | 1.279 | 0.967 | 2.182 | 1.043 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7944
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion|endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.073
|
0.759
|
0.224
|
0.080
|
0.824
|
0.269
|
0.314
|
0.435
|
0.199
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003564
|
2.000
|
1.000
|
Hsc_gene_14575.t1
|
Hsc_gene_14575.t1
|
— |
Q9V4N3.1 Cytochrome b5 [Drosophila melanogaster]
|
KAH7720091.1 Cytochrome b5-like Heme/Steroid binding domain containing protein [Aphelenchus avenae]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0020037
|
GO:0005575_0.850|GO:0110165_0.843|GO:0008150_0.734|GO:0016020_0.728|GO:0005622_0.687|GO:0005737_0.687|GO:0043226_0.591|GO:0003674_0.585|GO:0071944_0.577|GO:0043229_0.573|GO:0009987_0.569|GO:0043227_0.568|GO:0005886_0.563|GO:0043231_0.556
|
IPR001199+2-78_5-78_6-78_27-37_37-51_52-59_65-77+|IPR018506+33-40+|IPR036400+2-89_3-81+|IPR050668+3-118+
|
SM01117+5-78+
|
PF00173+6-78+Cytochrome_b5-like_Heme/Steroid_binding_domain
|
G3DSA:3.10.120.10:FF:000002+1-82+Cytochrome_b5_type_B
|
PTHR19359+3-118+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-141
|
2m33_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
15741.630
|
4.302
|
-9.500
|
26.950
|
12.057
|
48.227
|
51.773
|
10.638
|
16.312
|
51.773
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
saddlebrown
|
404.539
|
212.209
|
333.016
|
471.019
|
585.638
|
610.676
|
617.521
|
528.042
|
195.774
|
363.735
|
291.751
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.421
|
1.014
|
0.609
|
0.283
|
— | — |
-0.315
|
0.369
|
— | — | — | — | — |
No JSON data available for plots.