Hg_chrom4_TN10mRNA_8460
Organism: Heterodera glycines Gene Locus: chr4:7872524-7873631 Feature type: polypeptideProtein Sequence
Length: 194
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.678 | 0.599 | 1.218 | 0.355 | 1.031 | 0.661 | 0.798 | 0.258 | 1.26 | 1.254 | 1.172 | 2.122 | 0.716 | 1.09 | 0.947 | 1.252 | 0.592 | 1.093 | 0.0 | 0.152 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7946
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.643
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.063
|
0.967
|
0.007
|
0.189
|
0.017
|
0.115
|
0.101
|
0.037
|
0.086
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008944
|
1.000
|
1.000
|
Hsc_gene_14573.t1
|
Hsc_gene_14573.t1
|
— |
Q9DB15.2 Large ribosomal subunit protein bL12m [Mus musculus]
|
KAI6221437.1 Mitochondrial Ribosomal Protein, Large [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.911|GO:0110165_0.911|GO:0005622_0.846|GO:0005737_0.807|GO:0016020_0.774|GO:0043226_0.680|GO:0043229_0.675|GO:0043227_0.636|GO:0043231_0.621
|
IPR000206+43-192_49-193+|IPR008932+53-96+|IPR013823+127-193+|IPR014719+119-193_123-193+|IPR036235+50-117_51-94+
|
— |
PF00542+127-193+Ribosomal_protein_L7/L12_C-terminal_domain|PF16320+53-96+Ribosomal_protein_L7/L12_dimerisation_domain
|
G3DSA:3.30.1390.10:FF:000001+122-194+50S_ribosomal_protein_L7/L12
|
PTHR45987+43-192+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-194
|
2ftc_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
20421.560
|
5.980
|
-0.500
|
25.773
|
3.608
|
43.299
|
56.701
|
12.887
|
12.887
|
56.701
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
1327.559
|
724.990
|
955.565
|
1802.782
|
2018.341
|
1223.945
|
1225.837
|
681.033
|
1361.182
|
1549.997
|
1469.076
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.168
|
1.177
|
1.025
|
0.131
|
-0.706
|
— |
-0.950
|
0.991
|
— | — | — | — | — |
No JSON data available for plots.